Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 AC144628.2-201ENSMUST00000227374 352 ntBASIC3.75□□□□□ -1.81
ShhQ62226 Gm24268-201ENSMUST00000082990 110 ntBASIC3.75□□□□□ -1.81
ShhQ62226 Mir34b-201ENSMUST00000083558 84 ntBASIC3.75□□□□□ -1.81
ShhQ62226 Gm45030-201ENSMUST00000207575 1774 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
ShhQ62226 Vmn1r169-205ENSMUST00000228832 2749 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
ShhQ62226 Arhgap12-205ENSMUST00000182066 4506 ntAPPRIS ALT2 TSL 5 BASIC3.75□□□□□ -1.81
ShhQ62226 BC051076-202ENSMUST00000199477 2868 ntBASIC3.75□□□□□ -1.81
ShhQ62226 Gm38260-201ENSMUST00000193573 3995 ntBASIC3.75□□□□□ -1.81
ShhQ62226 Srek1-204ENSMUST00000210489 6330 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
ShhQ62226 2410141K09Rik-202ENSMUST00000172579 2587 ntAPPRIS P1 TSL 3 BASIC3.74□□□□□ -1.81
ShhQ62226 Olfr855-202ENSMUST00000215587 1797 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
ShhQ62226 Olfr1180-202ENSMUST00000216121 2079 ntAPPRIS P1 TSL 3 BASIC3.74□□□□□ -1.81
ShhQ62226 Igkv4-69-201ENSMUST00000103349 348 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
ShhQ62226 Dock11-202ENSMUST00000115264 1725 ntTSL 5 BASIC3.74□□□□□ -1.81
ShhQ62226 Gm23226-201ENSMUST00000116927 103 ntBASIC3.74□□□□□ -1.81
ShhQ62226 Gm15783-201ENSMUST00000117521 633 ntBASIC3.74□□□□□ -1.81
ShhQ62226 Gm13082-201ENSMUST00000118877 561 ntBASIC3.74□□□□□ -1.81
ShhQ62226 Gm15926-201ENSMUST00000120492 550 ntBASIC3.74□□□□□ -1.81
ShhQ62226 Gm13557-201ENSMUST00000120771 382 ntBASIC3.74□□□□□ -1.81
ShhQ62226 Gm14101-201ENSMUST00000121502 473 ntBASIC3.74□□□□□ -1.81
ShhQ62226 Gm14804-201ENSMUST00000122322 508 ntBASIC3.74□□□□□ -1.81
ShhQ62226 Gm15212-201ENSMUST00000122403 466 ntBASIC3.74□□□□□ -1.81
ShhQ62226 Gm23028-201ENSMUST00000158773 265 ntBASIC3.74□□□□□ -1.81
ShhQ62226 Gm25535-201ENSMUST00000175364 125 ntBASIC3.74□□□□□ -1.81
ShhQ62226 Clec5a-204ENSMUST00000177178 665 ntAPPRIS ALT2 TSL 1 (best) BASIC3.74□□□□□ -1.81
ShhQ62226 Gm21980-201ENSMUST00000180032 143 ntTSL 5 BASIC3.74□□□□□ -1.81
ShhQ62226 Tmsb15b2-202ENSMUST00000180194 243 ntAPPRIS P1 TSL 3 BASIC3.74□□□□□ -1.81
ShhQ62226 Gm23144-201ENSMUST00000180226 107 ntBASIC3.74□□□□□ -1.81
ShhQ62226 Gm26960-201ENSMUST00000182263 412 ntBASIC3.74□□□□□ -1.81
ShhQ62226 Mir6996-201ENSMUST00000183922 61 ntBASIC3.74□□□□□ -1.81
ShhQ62226 Scgb2b16-ps-201ENSMUST00000188720 333 ntBASIC3.74□□□□□ -1.81
ShhQ62226 2610044O15Rik8-203ENSMUST00000188757 413 ntTSL 2 BASIC3.74□□□□□ -1.81
ShhQ62226 Gm37626-201ENSMUST00000194332 4563 ntBASIC3.74□□□□□ -1.81
ShhQ62226 Trav15d-3-201ENSMUST00000198604 167 ntBASIC3.74□□□□□ -1.81
ShhQ62226 Olfr717-ps1-201ENSMUST00000205589 556 ntBASIC3.74□□□□□ -1.81
ShhQ62226 Gm45093-201ENSMUST00000206859 2463 ntBASIC3.74□□□□□ -1.81
ShhQ62226 Gm45614-201ENSMUST00000209994 721 ntBASIC3.74□□□□□ -1.81
ShhQ62226 Gm20039-201ENSMUST00000210329 394 ntBASIC3.74□□□□□ -1.81
ShhQ62226 Olfr133-204ENSMUST00000215549 2944 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
ShhQ62226 AC073947.3-201ENSMUST00000215576 766 ntBASIC3.74□□□□□ -1.81
ShhQ62226 AC113291.1-201ENSMUST00000217557 403 ntTSL 3 BASIC3.74□□□□□ -1.81
ShhQ62226 Gm5955-201ENSMUST00000222712 219 ntBASIC3.74□□□□□ -1.81
ShhQ62226 CT009713.9-201ENSMUST00000223604 389 ntBASIC3.74□□□□□ -1.81
ShhQ62226 CT030238.4-201ENSMUST00000228579 801 ntBASIC3.74□□□□□ -1.81
ShhQ62226 Olfr857-201ENSMUST00000077023 930 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
ShhQ62226 Olfr823-201ENSMUST00000081469 948 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
ShhQ62226 n-R5s54-201ENSMUST00000083837 112 ntBASIC3.74□□□□□ -1.81
ShhQ62226 Vmn2r30-202ENSMUST00000174368 3688 ntTSL 2 BASIC3.74□□□□□ -1.81
ShhQ62226 Zfp518a-201ENSMUST00000050092 6840 ntAPPRIS P1 TSL 2 BASIC3.74□□□□□ -1.81
ShhQ62226 Slfn8-201ENSMUST00000038141 4011 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
ShhQ62226 Gm45262-201ENSMUST00000209917 1463 ntBASIC3.73□□□□□ -1.81
ShhQ62226 Gm12010-201ENSMUST00000122400 2017 ntBASIC3.73□□□□□ -1.81
ShhQ62226 Vmn2r27-201ENSMUST00000100968 2574 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
ShhQ62226 AC173482.1-201ENSMUST00000224494 3815 ntBASIC3.73□□□□□ -1.81
ShhQ62226 Txndc9-204ENSMUST00000193832 3472 ntTSL 2 BASIC3.73□□□□□ -1.81
ShhQ62226 Neto2-201ENSMUST00000109686 5610 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
ShhQ62226 Nae1-201ENSMUST00000034349 1808 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
ShhQ62226 Olfr1205-202ENSMUST00000215929 6149 ntAPPRIS P1 TSL 3 BASIC3.73□□□□□ -1.81
ShhQ62226 Gm24951-201ENSMUST00000102182 109 ntBASIC3.73□□□□□ -1.81
ShhQ62226 Igkv1-110-201ENSMUST00000103321 401 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
ShhQ62226 Gm23133-201ENSMUST00000104255 135 ntBASIC3.73□□□□□ -1.81
ShhQ62226 Ifna-ps1-201ENSMUST00000119856 555 ntBASIC3.73□□□□□ -1.81
ShhQ62226 Gm13687-201ENSMUST00000119857 282 ntBASIC3.73□□□□□ -1.81
ShhQ62226 Gm15112-201ENSMUST00000120152 860 ntBASIC3.73□□□□□ -1.81
ShhQ62226 Mup-ps20-201ENSMUST00000121132 389 ntBASIC3.73□□□□□ -1.81
ShhQ62226 Vmn1r-ps116-201ENSMUST00000121544 292 ntBASIC3.73□□□□□ -1.81
ShhQ62226 Gm15899-201ENSMUST00000128586 238 ntBASIC3.73□□□□□ -1.81
ShhQ62226 Junos-205ENSMUST00000130684 614 ntTSL 3 BASIC3.73□□□□□ -1.81
ShhQ62226 Gm23332-201ENSMUST00000157424 275 ntBASIC3.73□□□□□ -1.81
ShhQ62226 Gm23124-201ENSMUST00000157650 107 ntBASIC3.73□□□□□ -1.81
ShhQ62226 Gm26187-201ENSMUST00000157693 101 ntBASIC3.73□□□□□ -1.81
ShhQ62226 Gm20777-201ENSMUST00000177818 699 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
ShhQ62226 Gm21874-201ENSMUST00000178374 699 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
ShhQ62226 Gm20873-201ENSMUST00000179410 699 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
ShhQ62226 Gm20737-201ENSMUST00000179665 699 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
ShhQ62226 Gm21310-201ENSMUST00000180130 699 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
ShhQ62226 Gm21425-201ENSMUST00000180318 699 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
ShhQ62226 RMST_1.1-201ENSMUST00000182623 407 ntTSL 2 BASIC3.73□□□□□ -1.81
ShhQ62226 Cox6b2-208ENSMUST00000183971 401 ntTSL 5 BASIC3.73□□□□□ -1.81
ShhQ62226 Gm29365-201ENSMUST00000189461 699 ntBASIC3.73□□□□□ -1.81
ShhQ62226 Gm37565-201ENSMUST00000192277 491 ntTSL 3 BASIC3.73□□□□□ -1.81
ShhQ62226 Gm43730-201ENSMUST00000199863 372 ntBASIC3.73□□□□□ -1.81
ShhQ62226 Gm45006-201ENSMUST00000206078 690 ntBASIC3.73□□□□□ -1.81
ShhQ62226 Gm44961-201ENSMUST00000207450 196 ntBASIC3.73□□□□□ -1.81
ShhQ62226 AC162387.1-201ENSMUST00000213369 213 ntBASIC3.73□□□□□ -1.81
ShhQ62226 Olfr944-202ENSMUST00000213908 1257 ntAPPRIS P1 TSL 2 BASIC3.73□□□□□ -1.81
ShhQ62226 CAAA01216754.6-201ENSMUST00000217183 398 ntTSL 5 BASIC3.73□□□□□ -1.81
ShhQ62226 Gm46194-201ENSMUST00000218136 320 ntBASIC3.73□□□□□ -1.81
ShhQ62226 AC116589.3-202ENSMUST00000221770 649 ntBASIC3.73□□□□□ -1.81
ShhQ62226 AC116589.6-201ENSMUST00000222252 649 ntBASIC3.73□□□□□ -1.81
ShhQ62226 AL672194.1-201ENSMUST00000224841 603 ntBASIC3.73□□□□□ -1.81
ShhQ62226 AC117656.3-202ENSMUST00000225842 1055 ntBASIC3.73□□□□□ -1.81
ShhQ62226 Ear14-201ENSMUST00000049559 468 ntBASIC3.73□□□□□ -1.81
ShhQ62226 Cldn34c4-201ENSMUST00000052500 814 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
ShhQ62226 Gm24147-201ENSMUST00000082763 144 ntBASIC3.73□□□□□ -1.81
ShhQ62226 Mir181a-1-201ENSMUST00000083631 87 ntBASIC3.73□□□□□ -1.81
ShhQ62226 Eif1-ps1-201ENSMUST00000086606 330 ntBASIC3.73□□□□□ -1.81
ShhQ62226 Olfr713-201ENSMUST00000098139 975 ntBASIC3.73□□□□□ -1.81
ShhQ62226 Olfr993-201ENSMUST00000099926 945 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
ShhQ62226 AC154323.3-201ENSMUST00000226927 1660 ntBASIC3.73□□□□□ -1.81
Retrieved 100 of 76,532 protein–RNA pairs in 92.8 ms