Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm43260-201ENSMUST00000197378 2430 ntBASIC5.65□□□□□ -1.51
Rnf40Q3U319 Olfr584-202ENSMUST00000214215 3152 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
Rnf40Q3U319 Gm27162-201ENSMUST00000185169 2478 ntTSL 2 BASIC5.65□□□□□ -1.51
Rnf40Q3U319 Olfr402-202ENSMUST00000216722 3566 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
Rnf40Q3U319 Il1rapl2-201ENSMUST00000075471 2061 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
Rnf40Q3U319 Trav6-7-dv9-201ENSMUST00000103638 379 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
Rnf40Q3U319 Mir465b-1-201ENSMUST00000103940 79 ntBASIC5.64□□□□□ -1.51
Rnf40Q3U319 Mir465b-2-201ENSMUST00000104662 79 ntBASIC5.64□□□□□ -1.51
Rnf40Q3U319 Gm13435-201ENSMUST00000120111 1023 ntBASIC5.64□□□□□ -1.51
Rnf40Q3U319 Gm17023-201ENSMUST00000165885 448 ntTSL 2 BASIC5.64□□□□□ -1.51
Rnf40Q3U319 Gm7266-201ENSMUST00000187999 405 ntBASIC5.64□□□□□ -1.51
Rnf40Q3U319 Gm43828-201ENSMUST00000196890 639 ntBASIC5.64□□□□□ -1.51
Rnf40Q3U319 Snord80-202ENSMUST00000199023 77 ntBASIC5.64□□□□□ -1.51
Rnf40Q3U319 Trav23-201ENSMUST00000199137 347 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
Rnf40Q3U319 Gm45355-201ENSMUST00000211342 296 ntTSL 3 BASIC5.64□□□□□ -1.51
Rnf40Q3U319 AC105958.2-201ENSMUST00000214167 191 ntBASIC5.64□□□□□ -1.51
Rnf40Q3U319 Gm7065-201ENSMUST00000222150 474 ntBASIC5.64□□□□□ -1.51
Rnf40Q3U319 AC108416.2-201ENSMUST00000226792 367 ntBASIC5.64□□□□□ -1.51
Rnf40Q3U319 Gm25930-201ENSMUST00000082785 107 ntBASIC5.64□□□□□ -1.51
Rnf40Q3U319 Gm25818-201ENSMUST00000083282 164 ntBASIC5.64□□□□□ -1.51
Rnf40Q3U319 n-R5s58-201ENSMUST00000093682 119 ntBASIC5.64□□□□□ -1.51
Rnf40Q3U319 Zfp329-202ENSMUST00000108546 2577 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
Rnf40Q3U319 Vmn2r117-201ENSMUST00000171996 2574 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
Rnf40Q3U319 Vmn1r6-205ENSMUST00000227631 7805 ntAPPRIS ALT2 BASIC5.64□□□□□ -1.51
Rnf40Q3U319 Ptprd-217ENSMUST00000174023 4530 ntTSL 5 BASIC5.64□□□□□ -1.51
Rnf40Q3U319 Gm38265-201ENSMUST00000193479 3766 ntBASIC5.64□□□□□ -1.51
Rnf40Q3U319 Il1rl2-204ENSMUST00000194296 3908 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
Rnf40Q3U319 Stk31-202ENSMUST00000163954 2988 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
Rnf40Q3U319 Olfr698-204ENSMUST00000216255 4024 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
Rnf40Q3U319 Olfr362-202ENSMUST00000213817 4059 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
Rnf40Q3U319 Vmn2r124-201ENSMUST00000176802 2568 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
Rnf40Q3U319 Olfr459-202ENSMUST00000214752 3715 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
Rnf40Q3U319 Ttn-202ENSMUST00000099980 16891 ntTSL 5 BASIC5.63□□□□□ -1.51
Rnf40Q3U319 Nlrp9b-201ENSMUST00000073151 3346 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
Rnf40Q3U319 Olfr198-202ENSMUST00000208244 2200 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
Rnf40Q3U319 St18-210ENSMUST00000150761 4264 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
Rnf40Q3U319 Vmn1r27-203ENSMUST00000228530 3115 ntAPPRIS P2 BASIC5.63□□□□□ -1.51
Rnf40Q3U319 Trappc1-203ENSMUST00000102602 751 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
Rnf40Q3U319 Igkv1-131-201ENSMUST00000103306 362 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
Rnf40Q3U319 Gm25421-201ENSMUST00000104218 164 ntBASIC5.63□□□□□ -1.51
Rnf40Q3U319 Gm23593-201ENSMUST00000104309 120 ntBASIC5.63□□□□□ -1.51
Rnf40Q3U319 Gm11971-201ENSMUST00000117715 288 ntBASIC5.63□□□□□ -1.51
Rnf40Q3U319 Gm13096-201ENSMUST00000127752 251 ntTSL 5 BASIC5.63□□□□□ -1.51
Rnf40Q3U319 Gm15414-201ENSMUST00000155217 440 ntTSL 3 BASIC5.63□□□□□ -1.51
Rnf40Q3U319 Gm22321-201ENSMUST00000157152 104 ntBASIC5.63□□□□□ -1.51
Rnf40Q3U319 Gm25054-201ENSMUST00000157370 97 ntBASIC5.63□□□□□ -1.51
Rnf40Q3U319 Gm22349-201ENSMUST00000157864 107 ntBASIC5.63□□□□□ -1.51
Rnf40Q3U319 Gm22447-201ENSMUST00000158155 92 ntBASIC5.63□□□□□ -1.51
Rnf40Q3U319 1700027A15Rik-201ENSMUST00000185768 321 ntTSL 5 BASIC5.63□□□□□ -1.51
Rnf40Q3U319 Pinc-202ENSMUST00000190487 961 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
Rnf40Q3U319 1700108F19Rik-207ENSMUST00000191384 210 ntTSL 3 BASIC5.63□□□□□ -1.51
Rnf40Q3U319 Gm32391-201ENSMUST00000191839 540 ntTSL 2 BASIC5.63□□□□□ -1.51
Rnf40Q3U319 Gm44010-201ENSMUST00000204432 331 ntBASIC5.63□□□□□ -1.51
Rnf40Q3U319 Fxyd1-207ENSMUST00000205778 438 ntAPPRIS P1 TSL 3 BASIC5.63□□□□□ -1.51
Rnf40Q3U319 BC024386-205ENSMUST00000210080 731 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
Rnf40Q3U319 Gm38574-201ENSMUST00000211855 640 ntBASIC5.63□□□□□ -1.51
Rnf40Q3U319 Olfr337-ps1-202ENSMUST00000213375 526 ntBASIC5.63□□□□□ -1.51
Rnf40Q3U319 Gm46332-202ENSMUST00000220320 516 ntTSL 3 BASIC5.63□□□□□ -1.51
Rnf40Q3U319 Gm22061-201ENSMUST00000082557 107 ntBASIC5.63□□□□□ -1.51
Rnf40Q3U319 Gm43426-201ENSMUST00000197287 2597 ntBASIC5.63□□□□□ -1.51
Rnf40Q3U319 Gm42548-201ENSMUST00000202669 3933 ntBASIC5.63□□□□□ -1.51
Rnf40Q3U319 Adam29-201ENSMUST00000053441 2726 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
Rnf40Q3U319 AC125223.3-201ENSMUST00000223588 2067 ntBASIC5.63□□□□□ -1.51
Rnf40Q3U319 AC133498.1-201ENSMUST00000222871 2925 ntTSL 5 BASIC5.63□□□□□ -1.51
Rnf40Q3U319 Peli1-202ENSMUST00000101477 3703 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
Rnf40Q3U319 Gm43085-201ENSMUST00000202859 3132 ntBASIC5.63□□□□□ -1.51
Rnf40Q3U319 Snhg14-214ENSMUST00000191191 3991 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
Rnf40Q3U319 Gm15354-201ENSMUST00000132019 1772 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
Rnf40Q3U319 Gm19428-201ENSMUST00000220512 1995 ntBASIC5.62□□□□□ -1.51
Rnf40Q3U319 1700061I17Rik-201ENSMUST00000029642 1962 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
Rnf40Q3U319 Gm43210-201ENSMUST00000196743 6152 ntBASIC5.62□□□□□ -1.51
Rnf40Q3U319 Vmn1r71-202ENSMUST00000226874 5194 ntAPPRIS P2 BASIC5.62□□□□□ -1.51
Rnf40Q3U319 Entpd1-201ENSMUST00000112231 4221 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
Rnf40Q3U319 Olfr685-204ENSMUST00000217432 3246 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
Rnf40Q3U319 Olfr1209-202ENSMUST00000213136 5611 ntAPPRIS P1 TSL 3 BASIC5.62□□□□□ -1.51
Rnf40Q3U319 Gnrhr-203ENSMUST00000113372 2265 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
Rnf40Q3U319 Olfr49-202ENSMUST00000216214 5717 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
Rnf40Q3U319 Pum2-204ENSMUST00000163569 3560 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
Rnf40Q3U319 Mir466b-3-201ENSMUST00000103806 81 ntBASIC5.62□□□□□ -1.51
Rnf40Q3U319 Gm24234-201ENSMUST00000104316 107 ntBASIC5.62□□□□□ -1.51
Rnf40Q3U319 Gm23839-201ENSMUST00000116957 109 ntBASIC5.62□□□□□ -1.51
Rnf40Q3U319 Gm13504-201ENSMUST00000117490 316 ntBASIC5.62□□□□□ -1.51
Rnf40Q3U319 Gm11902-201ENSMUST00000118849 270 ntBASIC5.62□□□□□ -1.51
Rnf40Q3U319 Gm15313-201ENSMUST00000119179 282 ntBASIC5.62□□□□□ -1.51
Rnf40Q3U319 Gm7079-201ENSMUST00000119726 171 ntBASIC5.62□□□□□ -1.51
Rnf40Q3U319 Gm13787-201ENSMUST00000120422 168 ntBASIC5.62□□□□□ -1.51
Rnf40Q3U319 Defa-ps8-201ENSMUST00000120972 279 ntBASIC5.62□□□□□ -1.51
Rnf40Q3U319 Gm22027-201ENSMUST00000122737 127 ntBASIC5.62□□□□□ -1.51
Rnf40Q3U319 Pfdn4-205ENSMUST00000136839 452 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
Rnf40Q3U319 Gm14041-201ENSMUST00000150181 276 ntTSL 3 BASIC5.62□□□□□ -1.51
Rnf40Q3U319 Gm2916-201ENSMUST00000178392 384 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
Rnf40Q3U319 Gm10410-201ENSMUST00000180138 384 ntBASIC5.62□□□□□ -1.51
Rnf40Q3U319 Scgb2b14-ps-201ENSMUST00000189424 336 ntBASIC5.62□□□□□ -1.51
Rnf40Q3U319 Gm19901-201ENSMUST00000192191 495 ntBASIC5.62□□□□□ -1.51
Rnf40Q3U319 Gm37693-201ENSMUST00000194562 234 ntBASIC5.62□□□□□ -1.51
Rnf40Q3U319 Gm19243-201ENSMUST00000198592 269 ntBASIC5.62□□□□□ -1.51
Rnf40Q3U319 Gm42663-201ENSMUST00000199883 351 ntBASIC5.62□□□□□ -1.51
Rnf40Q3U319 Gm44776-201ENSMUST00000207212 381 ntBASIC5.62□□□□□ -1.51
Rnf40Q3U319 Gm45448-201ENSMUST00000211739 209 ntBASIC5.62□□□□□ -1.51
Rnf40Q3U319 Scoc-204ENSMUST00000212449 280 ntTSL 3 BASIC5.62□□□□□ -1.51
Retrieved 100 of 76,532 protein–RNA pairs in 94.9 ms