Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 1700121L16Rik-201ENSMUST00000189166 561 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
ShhQ62226 Gm20736-203ENSMUST00000190282 836 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
ShhQ62226 Gm37757-201ENSMUST00000193072 210 ntBASIC3.77□□□□□ -1.81
ShhQ62226 Gm44748-201ENSMUST00000206040 658 ntTSL 5 BASIC3.77□□□□□ -1.81
ShhQ62226 Olfr1430-ps1-201ENSMUST00000207422 917 ntBASIC3.77□□□□□ -1.81
ShhQ62226 Gm38405-203ENSMUST00000208548 400 ntTSL 5 BASIC3.77□□□□□ -1.81
ShhQ62226 Fth-ps3-201ENSMUST00000210405 358 ntBASIC3.77□□□□□ -1.81
ShhQ62226 Gm39197-201ENSMUST00000212069 457 ntBASIC3.77□□□□□ -1.81
ShhQ62226 AL669916.3-201ENSMUST00000213855 94 ntBASIC3.77□□□□□ -1.81
ShhQ62226 Olfr953-ps1-201ENSMUST00000214463 892 ntBASIC3.77□□□□□ -1.81
ShhQ62226 AL669916.6-201ENSMUST00000214610 94 ntBASIC3.77□□□□□ -1.81
ShhQ62226 AL669916.4-201ENSMUST00000215976 94 ntBASIC3.77□□□□□ -1.81
ShhQ62226 AC155921.1-201ENSMUST00000216568 3841 ntBASIC3.77□□□□□ -1.81
ShhQ62226 AL669916.1-201ENSMUST00000217640 94 ntBASIC3.77□□□□□ -1.81
ShhQ62226 Gm29774-201ENSMUST00000219270 436 ntBASIC3.77□□□□□ -1.81
ShhQ62226 Gm8231-201ENSMUST00000221617 783 ntBASIC3.77□□□□□ -1.81
ShhQ62226 CT025689.4-201ENSMUST00000225926 601 ntBASIC3.77□□□□□ -1.81
ShhQ62226 Muc16-201ENSMUST00000034653 1035 ntTSL 2 BASIC3.77□□□□□ -1.81
ShhQ62226 Gm22508-201ENSMUST00000082772 110 ntBASIC3.77□□□□□ -1.81
ShhQ62226 Vmn1r52-205ENSMUST00000227893 3108 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
ShhQ62226 Zfp583-206ENSMUST00000165705 1707 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
ShhQ62226 Gm44682-201ENSMUST00000208501 2614 ntBASIC3.77□□□□□ -1.81
ShhQ62226 Vmn1r185-207ENSMUST00000227695 5292 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
ShhQ62226 Cdh10-201ENSMUST00000040562 3407 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
ShhQ62226 Erbin-207ENSMUST00000191275 5552 ntAPPRIS P3 TSL 1 (best) BASIC3.77□□□□□ -1.81
ShhQ62226 Obox4-ps12-201ENSMUST00000180084 1362 ntBASIC3.76□□□□□ -1.81
ShhQ62226 Gm21814-203ENSMUST00000203729 1352 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
ShhQ62226 Olfr1270-202ENSMUST00000213946 4930 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
ShhQ62226 Gm14421-201ENSMUST00000121755 1958 ntBASIC3.76□□□□□ -1.81
ShhQ62226 9230113P08Rik-201ENSMUST00000176049 1987 ntAPPRIS ALT2 TSL 2 BASIC3.76□□□□□ -1.81
ShhQ62226 Nlrp4d-201ENSMUST00000182420 2946 ntBASIC3.76□□□□□ -1.81
ShhQ62226 Dst-203ENSMUST00000115104 23279 ntAPPRIS ALT2 TSL 5 BASIC3.76□□□□□ -1.81
ShhQ62226 Cd180-201ENSMUST00000022124 2650 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
ShhQ62226 Gm14325-203ENSMUST00000188914 1494 ntTSL 5 BASIC3.76□□□□□ -1.81
ShhQ62226 Mir19b-1-201ENSMUST00000102301 87 ntBASIC3.76□□□□□ -1.81
ShhQ62226 Gm22936-201ENSMUST00000103955 126 ntBASIC3.76□□□□□ -1.81
ShhQ62226 Gm26418-201ENSMUST00000104275 137 ntBASIC3.76□□□□□ -1.81
ShhQ62226 Gm24788-201ENSMUST00000104283 156 ntBASIC3.76□□□□□ -1.81
ShhQ62226 Gm14401-201ENSMUST00000108968 247 ntTSL 5 BASIC3.76□□□□□ -1.81
ShhQ62226 2010106E10Rik-202ENSMUST00000113412 1276 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
ShhQ62226 Gm8757-201ENSMUST00000119660 372 ntBASIC3.76□□□□□ -1.81
ShhQ62226 4933406D12Rik-201ENSMUST00000147212 737 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
ShhQ62226 Gm16230-201ENSMUST00000155550 521 ntTSL 3 BASIC3.76□□□□□ -1.81
ShhQ62226 Gm2389-201ENSMUST00000160487 189 ntBASIC3.76□□□□□ -1.81
ShhQ62226 Gm22851-201ENSMUST00000178741 94 ntBASIC3.76□□□□□ -1.81
ShhQ62226 Gm25074-201ENSMUST00000178782 94 ntBASIC3.76□□□□□ -1.81
ShhQ62226 Gm24968-201ENSMUST00000179817 107 ntBASIC3.76□□□□□ -1.81
ShhQ62226 Gm27028-201ENSMUST00000182303 399 ntBASIC3.76□□□□□ -1.81
ShhQ62226 Gm27899-201ENSMUST00000184715 64 ntBASIC3.76□□□□□ -1.81
ShhQ62226 Gm28628-201ENSMUST00000187006 264 ntBASIC3.76□□□□□ -1.81
ShhQ62226 Gm19503-201ENSMUST00000187109 241 ntBASIC3.76□□□□□ -1.81
ShhQ62226 Gm29634-201ENSMUST00000188467 696 ntBASIC3.76□□□□□ -1.81
ShhQ62226 Gm28448-201ENSMUST00000188547 428 ntTSL 5 BASIC3.76□□□□□ -1.81
ShhQ62226 Gm28699-201ENSMUST00000189193 696 ntBASIC3.76□□□□□ -1.81
ShhQ62226 Gm37658-201ENSMUST00000192672 315 ntBASIC3.76□□□□□ -1.81
ShhQ62226 Gm29704-201ENSMUST00000196011 253 ntBASIC3.76□□□□□ -1.81
ShhQ62226 Gm18429-201ENSMUST00000198707 421 ntBASIC3.76□□□□□ -1.81
ShhQ62226 Gm5034-201ENSMUST00000199115 634 ntBASIC3.76□□□□□ -1.81
ShhQ62226 Gm43440-201ENSMUST00000201957 729 ntBASIC3.76□□□□□ -1.81
ShhQ62226 Gm19908-201ENSMUST00000204684 391 ntBASIC3.76□□□□□ -1.81
ShhQ62226 Gm7624-201ENSMUST00000209702 435 ntBASIC3.76□□□□□ -1.81
ShhQ62226 Olfr682-ps1-202ENSMUST00000214399 897 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
ShhQ62226 Olfr1151-201ENSMUST00000061081 927 ntAPPRIS P1 BASIC3.76□□□□□ -1.81
ShhQ62226 Snord21-201ENSMUST00000082519 94 ntBASIC3.76□□□□□ -1.81
ShhQ62226 Gm22287-201ENSMUST00000083197 107 ntBASIC3.76□□□□□ -1.81
ShhQ62226 1700008P02Rik-201ENSMUST00000091364 783 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
ShhQ62226 Sult1b1-202ENSMUST00000117455 2612 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
ShhQ62226 Olfr1184-202ENSMUST00000216675 3164 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
ShhQ62226 Oog1-201ENSMUST00000095509 1801 ntAPPRIS P2 TSL 1 (best) BASIC3.76□□□□□ -1.81
ShhQ62226 Arrdc3-201ENSMUST00000099356 4101 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
ShhQ62226 Ntrk3-201ENSMUST00000039431 19703 ntAPPRIS P2 TSL 1 (best) BASIC3.76□□□□□ -1.81
ShhQ62226 Gm3623-201ENSMUST00000173643 2747 ntBASIC3.76□□□□□ -1.81
ShhQ62226 Olfr101-203ENSMUST00000215392 2899 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
ShhQ62226 Gm6902-202ENSMUST00000191169 1581 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
ShhQ62226 Gm37742-201ENSMUST00000193263 3979 ntBASIC3.76□□□□□ -1.81
ShhQ62226 Vmn1r47-203ENSMUST00000227811 6792 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
ShhQ62226 Fbxw21-201ENSMUST00000054925 1512 ntAPPRIS P2 TSL 1 (best) BASIC3.75□□□□□ -1.81
ShhQ62226 Gm17067-201ENSMUST00000166837 3673 ntAPPRIS P1 TSL 5 BASIC3.75□□□□□ -1.81
ShhQ62226 Ankar-201ENSMUST00000053499 4571 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
ShhQ62226 Olfr213-202ENSMUST00000220008 4020 ntAPPRIS P1 TSL 5 BASIC3.75□□□□□ -1.81
ShhQ62226 Atad1-201ENSMUST00000070210 2813 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
ShhQ62226 Gm42606-201ENSMUST00000114209 239 ntBASIC3.75□□□□□ -1.81
ShhQ62226 Gm14558-201ENSMUST00000117458 381 ntBASIC3.75□□□□□ -1.81
ShhQ62226 Rhox11-ps2-201ENSMUST00000117962 451 ntBASIC3.75□□□□□ -1.81
ShhQ62226 4930522O17Rik-201ENSMUST00000155178 447 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
ShhQ62226 Gm23167-201ENSMUST00000157155 103 ntBASIC3.75□□□□□ -1.81
ShhQ62226 Gm22135-201ENSMUST00000158752 108 ntBASIC3.75□□□□□ -1.81
ShhQ62226 Gm16290-201ENSMUST00000161175 474 ntBASIC3.75□□□□□ -1.81
ShhQ62226 Gm23365-201ENSMUST00000175019 125 ntBASIC3.75□□□□□ -1.81
ShhQ62226 Gm25960-201ENSMUST00000175110 125 ntBASIC3.75□□□□□ -1.81
ShhQ62226 Gm44453-201ENSMUST00000175161 126 ntBASIC3.75□□□□□ -1.81
ShhQ62226 Gm25195-201ENSMUST00000177656 126 ntBASIC3.75□□□□□ -1.81
ShhQ62226 Gm29235-201ENSMUST00000185786 442 ntTSL 5 BASIC3.75□□□□□ -1.81
ShhQ62226 Gm38069-201ENSMUST00000195360 2144 ntBASIC3.75□□□□□ -1.81
ShhQ62226 Gm43804-201ENSMUST00000198280 456 ntBASIC3.75□□□□□ -1.81
ShhQ62226 Gm19649-201ENSMUST00000201126 822 ntBASIC3.75□□□□□ -1.81
ShhQ62226 Gm44294-201ENSMUST00000205090 728 ntBASIC3.75□□□□□ -1.81
ShhQ62226 Gm44946-201ENSMUST00000208425 572 ntBASIC3.75□□□□□ -1.81
ShhQ62226 Gm45588-201ENSMUST00000211213 630 ntBASIC3.75□□□□□ -1.81
ShhQ62226 AC161245.1-201ENSMUST00000217207 740 ntTSL 3 BASIC3.75□□□□□ -1.81
Retrieved 100 of 76,532 protein–RNA pairs in 129.9 ms