Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Gm19791-201ENSMUST00000180398 859 ntBASIC3.6□□□□□ -1.83
Ccdc88bQ4QRL3 Gm29167-201ENSMUST00000190024 377 ntBASIC3.6□□□□□ -1.83
Ccdc88bQ4QRL3 Gm37162-201ENSMUST00000191708 551 ntBASIC3.6□□□□□ -1.83
Ccdc88bQ4QRL3 4933401J01Rik-201ENSMUST00000193812 1070 ntBASIC3.6□□□□□ -1.83
Ccdc88bQ4QRL3 Olfr490-201ENSMUST00000210114 945 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
Ccdc88bQ4QRL3 Gm26072-201ENSMUST00000083135 107 ntBASIC3.6□□□□□ -1.83
Ccdc88bQ4QRL3 Gm10212-201ENSMUST00000087884 324 ntBASIC3.6□□□□□ -1.83
Ccdc88bQ4QRL3 Olfr1229-202ENSMUST00000213883 3594 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
Ccdc88bQ4QRL3 Rps13-ps8-201ENSMUST00000118906 401 ntBASIC3.59□□□□□ -1.84
Ccdc88bQ4QRL3 Gm13687-201ENSMUST00000119857 282 ntBASIC3.59□□□□□ -1.84
Ccdc88bQ4QRL3 Gm8121-201ENSMUST00000153583 499 ntBASIC3.59□□□□□ -1.84
Ccdc88bQ4QRL3 Gm24478-201ENSMUST00000157439 158 ntBASIC3.59□□□□□ -1.84
Ccdc88bQ4QRL3 Gm42474-201ENSMUST00000201073 505 ntBASIC3.59□□□□□ -1.84
Ccdc88bQ4QRL3 Vmn2r74-201ENSMUST00000166355 2562 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.84
Ccdc88bQ4QRL3 Vmn1r77-203ENSMUST00000227320 8308 ntAPPRIS P2 BASIC3.59□□□□□ -1.84
Ccdc88bQ4QRL3 Vmn1r89-202ENSMUST00000226717 4120 ntAPPRIS P2 BASIC3.59□□□□□ -1.84
Ccdc88bQ4QRL3 AC152951.2-201ENSMUST00000218293 3587 ntBASIC3.58□□□□□ -1.84
Ccdc88bQ4QRL3 Gm13595-201ENSMUST00000145994 494 ntTSL 3 BASIC3.58□□□□□ -1.84
Ccdc88bQ4QRL3 Gm12603-202ENSMUST00000146678 618 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
Ccdc88bQ4QRL3 Gm13923-201ENSMUST00000153283 288 ntTSL 3 BASIC3.58□□□□□ -1.84
Ccdc88bQ4QRL3 Gm23599-201ENSMUST00000157261 251 ntBASIC3.58□□□□□ -1.84
Ccdc88bQ4QRL3 Gm25883-201ENSMUST00000157781 271 ntBASIC3.58□□□□□ -1.84
Ccdc88bQ4QRL3 Gm22093-201ENSMUST00000158980 111 ntBASIC3.58□□□□□ -1.84
Ccdc88bQ4QRL3 Gm20484-201ENSMUST00000173738 231 ntTSL 2 BASIC3.58□□□□□ -1.84
Ccdc88bQ4QRL3 Gm19427-201ENSMUST00000183619 208 ntBASIC3.58□□□□□ -1.84
Ccdc88bQ4QRL3 Gm28623-201ENSMUST00000187219 192 ntBASIC3.58□□□□□ -1.84
Ccdc88bQ4QRL3 Gm3489-201ENSMUST00000190083 528 ntBASIC3.58□□□□□ -1.84
Ccdc88bQ4QRL3 AC153955.1-201ENSMUST00000217458 663 ntTSL 3 BASIC3.58□□□□□ -1.84
Ccdc88bQ4QRL3 Olfr469-201ENSMUST00000075704 945 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
Ccdc88bQ4QRL3 Gm23447-201ENSMUST00000082798 163 ntBASIC3.58□□□□□ -1.84
Ccdc88bQ4QRL3 Gm37965-201ENSMUST00000195304 1362 ntBASIC3.57□□□□□ -1.84
Ccdc88bQ4QRL3 CT009510.2-203ENSMUST00000226704 2136 ntBASIC3.57□□□□□ -1.84
Ccdc88bQ4QRL3 Gm27013-202ENSMUST00000205067 1436 ntBASIC3.57□□□□□ -1.84
Ccdc88bQ4QRL3 Gm14119-201ENSMUST00000119511 235 ntBASIC3.57□□□□□ -1.84
Ccdc88bQ4QRL3 Gm22159-201ENSMUST00000158412 130 ntBASIC3.57□□□□□ -1.84
Ccdc88bQ4QRL3 Gm8926-202ENSMUST00000178158 465 ntAPPRIS ALT2 TSL 5 BASIC3.57□□□□□ -1.84
Ccdc88bQ4QRL3 Gm8879-202ENSMUST00000178863 465 ntTSL 5 BASIC3.57□□□□□ -1.84
Ccdc88bQ4QRL3 Gm8922-202ENSMUST00000178989 465 ntTSL 5 BASIC3.57□□□□□ -1.84
Ccdc88bQ4QRL3 Speer1-202ENSMUST00000179482 465 ntTSL 5 BASIC3.57□□□□□ -1.84
Ccdc88bQ4QRL3 Gm17929-201ENSMUST00000186851 627 ntBASIC3.57□□□□□ -1.84
Ccdc88bQ4QRL3 4930437M23Rik-201ENSMUST00000197456 968 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
Ccdc88bQ4QRL3 Gm43358-201ENSMUST00000199217 970 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
Ccdc88bQ4QRL3 Gm43131-201ENSMUST00000200042 969 ntTSL 5 BASIC3.57□□□□□ -1.84
Ccdc88bQ4QRL3 Olfr1088-ps1-201ENSMUST00000213686 863 ntBASIC3.57□□□□□ -1.84
Ccdc88bQ4QRL3 Gm39388-201ENSMUST00000214502 1041 ntTSL 5 BASIC3.57□□□□□ -1.84
Ccdc88bQ4QRL3 AC153975.1-201ENSMUST00000220087 926 ntBASIC3.57□□□□□ -1.84
Ccdc88bQ4QRL3 AC115735.3-201ENSMUST00000227757 513 ntBASIC3.57□□□□□ -1.84
Ccdc88bQ4QRL3 Zfy2-201ENSMUST00000115891 2816 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
Ccdc88bQ4QRL3 Gm12985-201ENSMUST00000118376 183 ntBASIC3.56□□□□□ -1.84
Ccdc88bQ4QRL3 Gm22517-201ENSMUST00000158265 136 ntBASIC3.56□□□□□ -1.84
Ccdc88bQ4QRL3 Gm23005-201ENSMUST00000158950 136 ntBASIC3.56□□□□□ -1.84
Ccdc88bQ4QRL3 Gm20542-201ENSMUST00000174582 372 ntBASIC3.56□□□□□ -1.84
Ccdc88bQ4QRL3 Gm43676-201ENSMUST00000197532 540 ntBASIC3.56□□□□□ -1.84
Ccdc88bQ4QRL3 Igkv13-71-1-201ENSMUST00000199934 264 ntBASIC3.56□□□□□ -1.84
Ccdc88bQ4QRL3 Olfr873-201ENSMUST00000053919 1062 ntAPPRIS P2 BASIC3.56□□□□□ -1.84
Ccdc88bQ4QRL3 Olfr623-201ENSMUST00000068531 1075 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
Ccdc88bQ4QRL3 Vmn1r178-204ENSMUST00000226640 2282 ntBASIC3.56□□□□□ -1.84
Ccdc88bQ4QRL3 Tlr7-203ENSMUST00000112164 3468 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
Ccdc88bQ4QRL3 Gm23109-201ENSMUST00000116867 126 ntBASIC3.55□□□□□ -1.84
Ccdc88bQ4QRL3 Gm13656-201ENSMUST00000123829 345 ntTSL 3 BASIC3.55□□□□□ -1.84
Ccdc88bQ4QRL3 Gm24394-201ENSMUST00000158141 123 ntBASIC3.55□□□□□ -1.84
Ccdc88bQ4QRL3 Gm22891-201ENSMUST00000158641 164 ntBASIC3.55□□□□□ -1.84
Ccdc88bQ4QRL3 Mir3106-201ENSMUST00000175401 82 ntBASIC3.55□□□□□ -1.84
Ccdc88bQ4QRL3 Gm29534-201ENSMUST00000187328 382 ntBASIC3.55□□□□□ -1.84
Ccdc88bQ4QRL3 Gm46146-201ENSMUST00000217483 346 ntBASIC3.55□□□□□ -1.84
Ccdc88bQ4QRL3 AC130829.3-201ENSMUST00000222735 154 ntBASIC3.55□□□□□ -1.84
Ccdc88bQ4QRL3 AC133598.4-202ENSMUST00000225267 469 ntBASIC3.55□□□□□ -1.84
Ccdc88bQ4QRL3 AC167013.2-202ENSMUST00000227035 333 ntBASIC3.55□□□□□ -1.84
Ccdc88bQ4QRL3 AC165415.1-201ENSMUST00000228924 273 ntBASIC3.55□□□□□ -1.84
Ccdc88bQ4QRL3 Cd226-202ENSMUST00000097496 911 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
Ccdc88bQ4QRL3 Olfr178-203ENSMUST00000215032 2103 ntAPPRIS P1 TSL 5 BASIC3.55□□□□□ -1.84
Ccdc88bQ4QRL3 Tlr7-202ENSMUST00000112161 3897 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
Ccdc88bQ4QRL3 AC154681.1-201ENSMUST00000225876 1735 ntBASIC3.55□□□□□ -1.84
Ccdc88bQ4QRL3 Gm12515-201ENSMUST00000120116 361 ntBASIC3.54□□□□□ -1.84
Ccdc88bQ4QRL3 Gm24237-201ENSMUST00000157790 132 ntBASIC3.54□□□□□ -1.84
Ccdc88bQ4QRL3 Gm43406-201ENSMUST00000200356 334 ntBASIC3.54□□□□□ -1.84
Ccdc88bQ4QRL3 AC117656.3-204ENSMUST00000225656 859 ntBASIC3.54□□□□□ -1.84
Ccdc88bQ4QRL3 Vmn1r29-203ENSMUST00000227761 4671 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
Ccdc88bQ4QRL3 Vmn1r29-205ENSMUST00000228909 4658 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
Ccdc88bQ4QRL3 Gm22673-201ENSMUST00000104415 131 ntBASIC3.54□□□□□ -1.84
Ccdc88bQ4QRL3 Mup-ps14-201ENSMUST00000118437 532 ntBASIC3.54□□□□□ -1.84
Ccdc88bQ4QRL3 Mup-ps2-201ENSMUST00000142602 533 ntBASIC3.54□□□□□ -1.84
Ccdc88bQ4QRL3 Gm16306-201ENSMUST00000160568 176 ntTSL 3 BASIC3.54□□□□□ -1.84
Ccdc88bQ4QRL3 Gm8679-201ENSMUST00000210651 1036 ntBASIC3.54□□□□□ -1.84
Ccdc88bQ4QRL3 AC164424.1-201ENSMUST00000221690 170 ntBASIC3.54□□□□□ -1.84
Ccdc88bQ4QRL3 Gm37387-201ENSMUST00000192201 1806 ntBASIC3.53□□□□□ -1.84
Ccdc88bQ4QRL3 Gm13771-201ENSMUST00000117988 238 ntBASIC3.53□□□□□ -1.84
Ccdc88bQ4QRL3 Gm15785-201ENSMUST00000119145 694 ntBASIC3.53□□□□□ -1.84
Ccdc88bQ4QRL3 Gm26280-201ENSMUST00000157096 101 ntBASIC3.53□□□□□ -1.84
Ccdc88bQ4QRL3 Gm23385-201ENSMUST00000158592 295 ntBASIC3.53□□□□□ -1.84
Ccdc88bQ4QRL3 Vmn1r185-201ENSMUST00000171039 1144 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
Ccdc88bQ4QRL3 Gm38332-201ENSMUST00000194189 147 ntBASIC3.53□□□□□ -1.84
Ccdc88bQ4QRL3 Olfr485-201ENSMUST00000208296 954 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
Ccdc88bQ4QRL3 AC171206.1-201ENSMUST00000213612 213 ntBASIC3.53□□□□□ -1.84
Ccdc88bQ4QRL3 Gm7530-201ENSMUST00000218466 605 ntBASIC3.53□□□□□ -1.84
Ccdc88bQ4QRL3 Olfr855-201ENSMUST00000061693 992 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
Ccdc88bQ4QRL3 Trbv5-201ENSMUST00000103266 368 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
Ccdc88bQ4QRL3 Gm15159-201ENSMUST00000117062 764 ntBASIC3.52□□□□□ -1.85
Ccdc88bQ4QRL3 Gm12814-201ENSMUST00000117091 846 ntBASIC3.52□□□□□ -1.85
Ccdc88bQ4QRL3 Gm14939-201ENSMUST00000120347 680 ntBASIC3.52□□□□□ -1.85
Retrieved 100 of 76,532 protein–RNA pairs in 123.7 ms