Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm23466-201ENSMUST00000157133 106 ntBASIC5.67□□□□□ -1.5
Rnf40Q3U319 Gm3428-201ENSMUST00000183450 521 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
Rnf40Q3U319 Gm28641-201ENSMUST00000187783 335 ntTSL 5 BASIC5.67□□□□□ -1.5
Rnf40Q3U319 1700027A15Rik-203ENSMUST00000188793 423 ntTSL 3 BASIC5.67□□□□□ -1.5
Rnf40Q3U319 Gm37167-201ENSMUST00000194946 396 ntBASIC5.67□□□□□ -1.5
Rnf40Q3U319 Mir1a-2-201ENSMUST00000198520 72 ntBASIC5.67□□□□□ -1.5
Rnf40Q3U319 Gm7468-201ENSMUST00000203900 652 ntBASIC5.67□□□□□ -1.5
Rnf40Q3U319 Gm7825-201ENSMUST00000204046 416 ntBASIC5.67□□□□□ -1.5
Rnf40Q3U319 Usf2-ps1-201ENSMUST00000206657 311 ntBASIC5.67□□□□□ -1.5
Rnf40Q3U319 Gm34350-201ENSMUST00000208898 481 ntTSL 5 BASIC5.67□□□□□ -1.5
Rnf40Q3U319 Gm45422-201ENSMUST00000211476 246 ntBASIC5.67□□□□□ -1.5
Rnf40Q3U319 Olfr720-203ENSMUST00000216079 4692 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
Rnf40Q3U319 AC124601.1-201ENSMUST00000220531 135 ntBASIC5.67□□□□□ -1.5
Rnf40Q3U319 AC154618.1-201ENSMUST00000227451 303 ntBASIC5.67□□□□□ -1.5
Rnf40Q3U319 AC157772.2-201ENSMUST00000228202 259 ntBASIC5.67□□□□□ -1.5
Rnf40Q3U319 CT030238.1-201ENSMUST00000228393 442 ntBASIC5.67□□□□□ -1.5
Rnf40Q3U319 Gm25134-201ENSMUST00000082646 160 ntBASIC5.67□□□□□ -1.5
Rnf40Q3U319 Gm26767-201ENSMUST00000180936 4476 ntTSL 5 BASIC5.67□□□□□ -1.5
Rnf40Q3U319 Slco1a1-202ENSMUST00000168119 3904 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
Rnf40Q3U319 Olfr1318-205ENSMUST00000217533 3747 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
Rnf40Q3U319 Nexn-207ENSMUST00000198460 1785 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
Rnf40Q3U319 Gm37357-201ENSMUST00000192386 3123 ntBASIC5.67□□□□□ -1.5
Rnf40Q3U319 Piga-201ENSMUST00000033754 3594 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
Rnf40Q3U319 Vmn1r173-202ENSMUST00000226233 9416 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
Rnf40Q3U319 Ccr2-204ENSMUST00000171719 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
Rnf40Q3U319 Tmem67-201ENSMUST00000050686 3456 ntAPPRIS P2 TSL 1 (best) BASIC5.67□□□□□ -1.5
Rnf40Q3U319 Tex11-201ENSMUST00000009814 3250 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
Rnf40Q3U319 Vmn2r100-201ENSMUST00000166081 2553 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
Rnf40Q3U319 Gm43197-201ENSMUST00000201493 2583 ntBASIC5.66□□□□□ -1.5
Rnf40Q3U319 Naalad2-207ENSMUST00000172171 4066 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
Rnf40Q3U319 Akr1e1-201ENSMUST00000091848 3463 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
Rnf40Q3U319 Gm42659-201ENSMUST00000196955 1754 ntBASIC5.66□□□□□ -1.5
Rnf40Q3U319 Igkv5-43-201ENSMUST00000103368 379 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
Rnf40Q3U319 Gm26144-201ENSMUST00000104475 132 ntBASIC5.66□□□□□ -1.5
Rnf40Q3U319 Gm12112-201ENSMUST00000117772 231 ntBASIC5.66□□□□□ -1.5
Rnf40Q3U319 Gm14472-201ENSMUST00000119815 282 ntBASIC5.66□□□□□ -1.5
Rnf40Q3U319 Gm14008-201ENSMUST00000120483 274 ntBASIC5.66□□□□□ -1.5
Rnf40Q3U319 Gm15044-201ENSMUST00000120703 598 ntBASIC5.66□□□□□ -1.5
Rnf40Q3U319 Gm12101-201ENSMUST00000121590 390 ntBASIC5.66□□□□□ -1.5
Rnf40Q3U319 Defb28-201ENSMUST00000121912 397 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
Rnf40Q3U319 Platr32-201ENSMUST00000148597 394 ntTSL 5 BASIC5.66□□□□□ -1.5
Rnf40Q3U319 Gm23982-201ENSMUST00000157141 106 ntBASIC5.66□□□□□ -1.5
Rnf40Q3U319 Gm26162-201ENSMUST00000157793 132 ntBASIC5.66□□□□□ -1.5
Rnf40Q3U319 Gm24767-201ENSMUST00000158509 95 ntBASIC5.66□□□□□ -1.5
Rnf40Q3U319 Gm26979-201ENSMUST00000182971 217 ntTSL 3 BASIC5.66□□□□□ -1.5
Rnf40Q3U319 Gm37601-201ENSMUST00000194922 394 ntBASIC5.66□□□□□ -1.5
Rnf40Q3U319 Gm44382-201ENSMUST00000198683 122 ntBASIC5.66□□□□□ -1.5
Rnf40Q3U319 Gm45013-201ENSMUST00000206883 178 ntBASIC5.66□□□□□ -1.5
Rnf40Q3U319 Gm45044-201ENSMUST00000208078 396 ntTSL 5 BASIC5.66□□□□□ -1.5
Rnf40Q3U319 Gm45539-201ENSMUST00000210313 428 ntBASIC5.66□□□□□ -1.5
Rnf40Q3U319 Gm45267-201ENSMUST00000211028 522 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
Rnf40Q3U319 Gm36543-201ENSMUST00000217933 542 ntTSL 5 BASIC5.66□□□□□ -1.5
Rnf40Q3U319 AC156950.1-201ENSMUST00000219604 456 ntBASIC5.66□□□□□ -1.5
Rnf40Q3U319 Gm16419-201ENSMUST00000221057 625 ntBASIC5.66□□□□□ -1.5
Rnf40Q3U319 Gm18620-201ENSMUST00000222295 324 ntBASIC5.66□□□□□ -1.5
Rnf40Q3U319 AC156559.2-201ENSMUST00000224403 384 ntBASIC5.66□□□□□ -1.5
Rnf40Q3U319 AC123533.1-201ENSMUST00000227782 446 ntBASIC5.66□□□□□ -1.5
Rnf40Q3U319 AC132852.1-201ENSMUST00000214683 2324 ntBASIC5.66□□□□□ -1.5
Rnf40Q3U319 Pon3-201ENSMUST00000031773 1837 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
Rnf40Q3U319 AC158115.2-201ENSMUST00000221804 5563 ntTSL 5 BASIC5.66□□□□□ -1.5
Rnf40Q3U319 Scaper-204ENSMUST00000216595 2911 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
Rnf40Q3U319 Ugt2b5-201ENSMUST00000067790 1858 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
Rnf40Q3U319 Gm43784-201ENSMUST00000202922 2436 ntBASIC5.66□□□□□ -1.5
Rnf40Q3U319 Fign-203ENSMUST00000131615 9734 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
Rnf40Q3U319 Gm5444-201ENSMUST00000065956 2468 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
Rnf40Q3U319 Olfr684-203ENSMUST00000215744 3084 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
Rnf40Q3U319 Obscn-202ENSMUST00000047441 24175 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
Rnf40Q3U319 Gm13477-201ENSMUST00000121620 2687 ntBASIC5.65□□□□□ -1.5
Rnf40Q3U319 Olfr1348-207ENSMUST00000209029 2696 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
Rnf40Q3U319 Gvin1-202ENSMUST00000183409 9005 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
Rnf40Q3U319 Acsm3-204ENSMUST00000106528 2755 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
Rnf40Q3U319 Gm36969-201ENSMUST00000194551 2809 ntBASIC5.65□□□□□ -1.5
Rnf40Q3U319 Gm26340-201ENSMUST00000102365 99 ntBASIC5.65□□□□□ -1.5
Rnf40Q3U319 Gm22267-201ENSMUST00000104008 131 ntBASIC5.65□□□□□ -1.5
Rnf40Q3U319 Gm25346-201ENSMUST00000104509 128 ntBASIC5.65□□□□□ -1.5
Rnf40Q3U319 Gm42674-201ENSMUST00000107330 446 ntAPPRIS P1 TSL 3 BASIC5.65□□□□□ -1.5
Rnf40Q3U319 Fam107b-205ENSMUST00000115055 515 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
Rnf40Q3U319 Gm12125-201ENSMUST00000117261 736 ntBASIC5.65□□□□□ -1.5
Rnf40Q3U319 Gm15926-201ENSMUST00000120492 550 ntBASIC5.65□□□□□ -1.5
Rnf40Q3U319 Gm14875-201ENSMUST00000120881 319 ntBASIC5.65□□□□□ -1.5
Rnf40Q3U319 Gm4660-201ENSMUST00000131499 403 ntBASIC5.65□□□□□ -1.5
Rnf40Q3U319 Gm6265-201ENSMUST00000149263 231 ntBASIC5.65□□□□□ -1.5
Rnf40Q3U319 Ptprtos-201ENSMUST00000151688 630 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
Rnf40Q3U319 Gm25621-201ENSMUST00000157223 114 ntBASIC5.65□□□□□ -1.5
Rnf40Q3U319 Gm23642-201ENSMUST00000157858 258 ntBASIC5.65□□□□□ -1.5
Rnf40Q3U319 Gm3143-202ENSMUST00000198364 675 ntTSL 2 BASIC5.65□□□□□ -1.5
Rnf40Q3U319 Vmn1r-ps16-201ENSMUST00000204747 105 ntBASIC5.65□□□□□ -1.5
Rnf40Q3U319 Gm18991-201ENSMUST00000209225 746 ntBASIC5.65□□□□□ -1.5
Rnf40Q3U319 Gm45778-201ENSMUST00000211959 153 ntBASIC5.65□□□□□ -1.5
Rnf40Q3U319 Gm31447-201ENSMUST00000222345 384 ntTSL 3 BASIC5.65□□□□□ -1.5
Rnf40Q3U319 Gm22806-201ENSMUST00000082738 136 ntBASIC5.65□□□□□ -1.5
Rnf40Q3U319 Gm22353-201ENSMUST00000083918 136 ntBASIC5.65□□□□□ -1.5
Rnf40Q3U319 Olfr716-206ENSMUST00000215284 3515 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
Rnf40Q3U319 Gm17976-201ENSMUST00000184037 1909 ntBASIC5.65□□□□□ -1.51
Rnf40Q3U319 Atp1b4-202ENSMUST00000115134 4189 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
Rnf40Q3U319 2210418O10Rik-203ENSMUST00000136719 2314 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
Rnf40Q3U319 Olfr213-202ENSMUST00000220008 4020 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
Rnf40Q3U319 Gm17752-201ENSMUST00000185787 3726 ntBASIC5.65□□□□□ -1.51
Rnf40Q3U319 1700022I11Rik-201ENSMUST00000030163 3727 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
Rnf40Q3U319 Ccnb3-201ENSMUST00000056725 4475 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.51
Retrieved 100 of 76,532 protein–RNA pairs in 106.1 ms