Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm28263-201ENSMUST00000185884 400 ntBASIC3.79□□□□□ -1.8
ShhQ62226 Gm28994-201ENSMUST00000188556 621 ntTSL 5 BASIC3.79□□□□□ -1.8
ShhQ62226 Gm38363-202ENSMUST00000195029 622 ntTSL 5 BASIC3.79□□□□□ -1.8
ShhQ62226 Igkv2-105-201ENSMUST00000196931 377 ntBASIC3.79□□□□□ -1.8
ShhQ62226 Pgk1-ps3-201ENSMUST00000198338 1201 ntBASIC3.79□□□□□ -1.8
ShhQ62226 Gm44295-201ENSMUST00000203805 437 ntBASIC3.79□□□□□ -1.8
ShhQ62226 Gm44995-201ENSMUST00000207056 504 ntTSL 3 BASIC3.79□□□□□ -1.8
ShhQ62226 Gm45317-201ENSMUST00000210385 223 ntBASIC3.79□□□□□ -1.8
ShhQ62226 AC160134.1-201ENSMUST00000213450 551 ntBASIC3.79□□□□□ -1.8
ShhQ62226 Gm4921-201ENSMUST00000219804 992 ntBASIC3.79□□□□□ -1.8
ShhQ62226 AC129308.2-201ENSMUST00000224588 789 ntBASIC3.79□□□□□ -1.8
ShhQ62226 Ly6a-201ENSMUST00000023248 819 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
ShhQ62226 Dynap-201ENSMUST00000025390 1227 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
ShhQ62226 Olfr1495-201ENSMUST00000061669 1089 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
ShhQ62226 Olfr138-201ENSMUST00000071871 939 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
ShhQ62226 Olfr873-202ENSMUST00000075717 991 ntAPPRIS ALT2 TSL 2 BASIC3.79□□□□□ -1.8
ShhQ62226 mt-Tr-201ENSMUST00000082412 68 ntBASIC3.79□□□□□ -1.8
ShhQ62226 Gm22423-201ENSMUST00000082861 184 ntBASIC3.79□□□□□ -1.8
ShhQ62226 Vmn1r34-205ENSMUST00000227332 3075 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
ShhQ62226 Gm15097-202ENSMUST00000112741 1953 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
ShhQ62226 Fgf7-202ENSMUST00000110442 2287 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
ShhQ62226 Gm15679-201ENSMUST00000161244 1936 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
ShhQ62226 Tmem71-201ENSMUST00000048372 2988 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
ShhQ62226 Gprc6a-203ENSMUST00000219286 2574 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
ShhQ62226 Cyp3a25-201ENSMUST00000068317 2000 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
ShhQ62226 Gm4855-201ENSMUST00000192270 1967 ntBASIC3.78□□□□□ -1.8
ShhQ62226 Olfr1251-201ENSMUST00000214304 3133 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
ShhQ62226 Adam26a-201ENSMUST00000049577 2489 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
ShhQ62226 BB287469-201ENSMUST00000110149 1851 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
ShhQ62226 Gm4027-201ENSMUST00000164838 1850 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
ShhQ62226 Olfr1322-202ENSMUST00000217355 3886 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
ShhQ62226 Klrc2-203ENSMUST00000118401 707 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
ShhQ62226 Dnaic1-202ENSMUST00000119127 500 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
ShhQ62226 Klrc2-204ENSMUST00000119533 717 ntAPPRIS P4 TSL 1 (best) BASIC3.78□□□□□ -1.8
ShhQ62226 Nectin3-204ENSMUST00000119941 529 ntTSL 3 BASIC3.78□□□□□ -1.8
ShhQ62226 Gm6373-201ENSMUST00000121026 360 ntBASIC3.78□□□□□ -1.8
ShhQ62226 Olfr1001-ps1-201ENSMUST00000121340 945 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
ShhQ62226 Gm13406-201ENSMUST00000121991 256 ntBASIC3.78□□□□□ -1.8
ShhQ62226 Gm23463-201ENSMUST00000122468 99 ntBASIC3.78□□□□□ -1.8
ShhQ62226 Gm25908-201ENSMUST00000157624 98 ntBASIC3.78□□□□□ -1.8
ShhQ62226 Gm24850-201ENSMUST00000158029 119 ntBASIC3.78□□□□□ -1.8
ShhQ62226 Gm17183-201ENSMUST00000171170 493 ntBASIC3.78□□□□□ -1.8
ShhQ62226 Mir5098-201ENSMUST00000175320 82 ntBASIC3.78□□□□□ -1.8
ShhQ62226 Mir6385-201ENSMUST00000184295 105 ntBASIC3.78□□□□□ -1.8
ShhQ62226 Gm29320-201ENSMUST00000185235 615 ntBASIC3.78□□□□□ -1.8
ShhQ62226 Gm29179-202ENSMUST00000186138 615 ntBASIC3.78□□□□□ -1.8
ShhQ62226 Gm29448-201ENSMUST00000186675 615 ntBASIC3.78□□□□□ -1.8
ShhQ62226 Gm29314-201ENSMUST00000186800 615 ntBASIC3.78□□□□□ -1.8
ShhQ62226 Gm20268-201ENSMUST00000187932 845 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
ShhQ62226 Gm28253-202ENSMUST00000187971 615 ntBASIC3.78□□□□□ -1.8
ShhQ62226 Gm29169-201ENSMUST00000189835 615 ntBASIC3.78□□□□□ -1.8
ShhQ62226 Gm18291-201ENSMUST00000190791 301 ntBASIC3.78□□□□□ -1.8
ShhQ62226 4930449A18Rik-202ENSMUST00000192453 1200 ntBASIC3.78□□□□□ -1.8
ShhQ62226 Gm38076-201ENSMUST00000193889 450 ntBASIC3.78□□□□□ -1.8
ShhQ62226 Gm38041-201ENSMUST00000194445 661 ntBASIC3.78□□□□□ -1.8
ShhQ62226 Gm37791-201ENSMUST00000195081 286 ntBASIC3.78□□□□□ -1.8
ShhQ62226 AC152979.1-201ENSMUST00000218214 289 ntBASIC3.78□□□□□ -1.8
ShhQ62226 Olfr746-202ENSMUST00000218546 987 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
ShhQ62226 AC131677.1-201ENSMUST00000218721 535 ntBASIC3.78□□□□□ -1.8
ShhQ62226 Vmn1r17-202ENSMUST00000227966 912 ntAPPRIS P2 BASIC3.78□□□□□ -1.8
ShhQ62226 AC131029.2-202ENSMUST00000228430 496 ntBASIC3.78□□□□□ -1.8
ShhQ62226 Olfr251-201ENSMUST00000072731 951 ntAPPRIS P2 BASIC3.78□□□□□ -1.8
ShhQ62226 Olfr781-201ENSMUST00000075613 936 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
ShhQ62226 Gm23925-201ENSMUST00000082471 132 ntBASIC3.78□□□□□ -1.8
ShhQ62226 Gm22572-201ENSMUST00000082985 105 ntBASIC3.78□□□□□ -1.8
ShhQ62226 Gm25578-201ENSMUST00000083406 104 ntBASIC3.78□□□□□ -1.8
ShhQ62226 Tas2r115-201ENSMUST00000095394 1033 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
ShhQ62226 Olfr1369-ps1-204ENSMUST00000215207 3794 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
ShhQ62226 AC159193.2-201ENSMUST00000220865 4251 ntBASIC3.78□□□□□ -1.8
ShhQ62226 Ndst4-204ENSMUST00000173932 7417 ntAPPRIS P1 TSL 5 BASIC3.78□□□□□ -1.8
ShhQ62226 Enam-202ENSMUST00000199104 4171 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
ShhQ62226 AC154677.1-201ENSMUST00000227636 2805 ntBASIC3.78□□□□□ -1.8
ShhQ62226 Gm14442-201ENSMUST00000119690 1736 ntBASIC3.78□□□□□ -1.8
ShhQ62226 Chrdl1-201ENSMUST00000063029 3550 ntAPPRIS ALT2 TSL 1 (best) BASIC3.78□□□□□ -1.8
ShhQ62226 Cdh19-201ENSMUST00000094626 3914 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
ShhQ62226 Fam71d-205ENSMUST00000219551 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC3.77□□□□□ -1.81
ShhQ62226 Syne2-201ENSMUST00000044217 21690 ntAPPRIS P2 TSL 5 BASIC3.77□□□□□ -1.81
ShhQ62226 Phex-201ENSMUST00000079945 6265 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
ShhQ62226 Gm43327-201ENSMUST00000199285 4055 ntBASIC3.77□□□□□ -1.81
ShhQ62226 Gm24608-201ENSMUST00000104381 136 ntBASIC3.77□□□□□ -1.81
ShhQ62226 Gm24376-201ENSMUST00000104399 127 ntBASIC3.77□□□□□ -1.81
ShhQ62226 Gm26019-201ENSMUST00000104407 119 ntBASIC3.77□□□□□ -1.81
ShhQ62226 Vmn1r121-201ENSMUST00000105197 945 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
ShhQ62226 Gm14299-201ENSMUST00000117586 397 ntBASIC3.77□□□□□ -1.81
ShhQ62226 Gm15988-201ENSMUST00000118677 367 ntBASIC3.77□□□□□ -1.81
ShhQ62226 Gm11262-201ENSMUST00000119326 833 ntBASIC3.77□□□□□ -1.81
ShhQ62226 Gm14428-201ENSMUST00000120408 822 ntBASIC3.77□□□□□ -1.81
ShhQ62226 Platr3-201ENSMUST00000146980 412 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
ShhQ62226 Rgs2-204ENSMUST00000153527 588 ntTSL 2 BASIC3.77□□□□□ -1.81
ShhQ62226 Gm23168-201ENSMUST00000157156 143 ntBASIC3.77□□□□□ -1.81
ShhQ62226 Gm22156-201ENSMUST00000158409 141 ntBASIC3.77□□□□□ -1.81
ShhQ62226 Gm25977-201ENSMUST00000158697 85 ntBASIC3.77□□□□□ -1.81
ShhQ62226 Gm4175-201ENSMUST00000172863 945 ntAPPRIS P1 BASIC3.77□□□□□ -1.81
ShhQ62226 Gm19932-201ENSMUST00000177033 313 ntBASIC3.77□□□□□ -1.81
ShhQ62226 Gm20888-201ENSMUST00000178934 567 ntTSL 5 BASIC3.77□□□□□ -1.81
ShhQ62226 Gm21638-201ENSMUST00000179473 836 ntBASIC3.77□□□□□ -1.81
ShhQ62226 Gm27660-201ENSMUST00000184028 208 ntBASIC3.77□□□□□ -1.81
ShhQ62226 Obox4-ps39-201ENSMUST00000184306 628 ntBASIC3.77□□□□□ -1.81
ShhQ62226 Trdv1-202ENSMUST00000187163 334 ntAPPRIS ALT2 BASIC3.77□□□□□ -1.81
ShhQ62226 Gm28217-201ENSMUST00000188613 648 ntTSL 5 BASIC3.77□□□□□ -1.81
Retrieved 100 of 76,532 protein–RNA pairs in 98.5 ms