Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Olfr808-202ENSMUST00000203236 4523 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
Rnf40Q3U319 Gm36944-201ENSMUST00000192257 2759 ntBASIC5.7□□□□□ -1.5
Rnf40Q3U319 Tmem72-201ENSMUST00000056623 17152 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
Rnf40Q3U319 Vmn1r6-203ENSMUST00000227131 8330 ntAPPRIS P2 BASIC5.7□□□□□ -1.5
Rnf40Q3U319 Gm15332-201ENSMUST00000118386 357 ntBASIC5.7□□□□□ -1.5
Rnf40Q3U319 Gm11822-201ENSMUST00000119177 415 ntBASIC5.7□□□□□ -1.5
Rnf40Q3U319 Gm15205-201ENSMUST00000129329 632 ntTSL 5 BASIC5.7□□□□□ -1.5
Rnf40Q3U319 Gm12343-201ENSMUST00000138817 414 ntTSL 3 BASIC5.7□□□□□ -1.5
Rnf40Q3U319 Gm23233-201ENSMUST00000157301 137 ntBASIC5.7□□□□□ -1.5
Rnf40Q3U319 Gm24537-201ENSMUST00000157950 102 ntBASIC5.7□□□□□ -1.5
Rnf40Q3U319 Gm27245-201ENSMUST00000184385 376 ntBASIC5.7□□□□□ -1.5
Rnf40Q3U319 Gm37123-201ENSMUST00000192994 1171 ntBASIC5.7□□□□□ -1.5
Rnf40Q3U319 4930520M14Rik-201ENSMUST00000196947 701 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
Rnf40Q3U319 Gm44324-201ENSMUST00000198517 135 ntBASIC5.7□□□□□ -1.5
Rnf40Q3U319 Gm8719-201ENSMUST00000203602 534 ntBASIC5.7□□□□□ -1.5
Rnf40Q3U319 Prss23os-201ENSMUST00000032858 334 ntTSL 2 BASIC5.7□□□□□ -1.5
Rnf40Q3U319 Vmn2r29-201ENSMUST00000170922 2559 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
Rnf40Q3U319 Gm8978-201ENSMUST00000124230 2224 ntTSL 5 BASIC5.7□□□□□ -1.5
Rnf40Q3U319 CT025577.1-201ENSMUST00000220862 2846 ntBASIC5.7□□□□□ -1.5
Rnf40Q3U319 Gm37589-201ENSMUST00000193609 3994 ntBASIC5.69□□□□□ -1.5
Rnf40Q3U319 Ehf-203ENSMUST00000111176 3696 ntTSL 5 BASIC5.69□□□□□ -1.5
Rnf40Q3U319 Mir680-1-201ENSMUST00000102257 109 ntBASIC5.69□□□□□ -1.5
Rnf40Q3U319 Gm24671-201ENSMUST00000104159 158 ntBASIC5.69□□□□□ -1.5
Rnf40Q3U319 Gm12568-201ENSMUST00000117362 624 ntBASIC5.69□□□□□ -1.5
Rnf40Q3U319 Gm11826-201ENSMUST00000118781 438 ntBASIC5.69□□□□□ -1.5
Rnf40Q3U319 Rps11-ps2-201ENSMUST00000121547 456 ntBASIC5.69□□□□□ -1.5
Rnf40Q3U319 Gm11931-201ENSMUST00000121630 447 ntBASIC5.69□□□□□ -1.5
Rnf40Q3U319 Gm25291-201ENSMUST00000122795 144 ntBASIC5.69□□□□□ -1.5
Rnf40Q3U319 Ppp1r2-ps7-201ENSMUST00000140102 609 ntBASIC5.69□□□□□ -1.5
Rnf40Q3U319 Gm16351-201ENSMUST00000142008 250 ntTSL 3 BASIC5.69□□□□□ -1.5
Rnf40Q3U319 Gm11816-201ENSMUST00000142744 353 ntTSL 3 BASIC5.69□□□□□ -1.5
Rnf40Q3U319 Gm25117-201ENSMUST00000157194 144 ntBASIC5.69□□□□□ -1.5
Rnf40Q3U319 Gm22212-201ENSMUST00000158096 106 ntBASIC5.69□□□□□ -1.5
Rnf40Q3U319 Gm22428-201ENSMUST00000158554 132 ntBASIC5.69□□□□□ -1.5
Rnf40Q3U319 Gm10177-201ENSMUST00000160052 444 ntBASIC5.69□□□□□ -1.5
Rnf40Q3U319 Gm16146-201ENSMUST00000160306 439 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
Rnf40Q3U319 Gm17100-201ENSMUST00000168963 272 ntBASIC5.69□□□□□ -1.5
Rnf40Q3U319 Gm29023-201ENSMUST00000190543 325 ntTSL 5 BASIC5.69□□□□□ -1.5
Rnf40Q3U319 Ighv1-14-201ENSMUST00000194015 402 ntBASIC5.69□□□□□ -1.5
Rnf40Q3U319 Gm37184-201ENSMUST00000194720 650 ntTSL 3 BASIC5.69□□□□□ -1.5
Rnf40Q3U319 Igkv9-128-201ENSMUST00000196602 353 ntBASIC5.69□□□□□ -1.5
Rnf40Q3U319 Gm33758-201ENSMUST00000199230 407 ntTSL 3 BASIC5.69□□□□□ -1.5
Rnf40Q3U319 Fxyd1-212ENSMUST00000206305 568 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
Rnf40Q3U319 Gm7990-201ENSMUST00000212126 593 ntBASIC5.69□□□□□ -1.5
Rnf40Q3U319 Gm30674-201ENSMUST00000214523 392 ntBASIC5.69□□□□□ -1.5
Rnf40Q3U319 Gm23722-201ENSMUST00000083002 130 ntBASIC5.69□□□□□ -1.5
Rnf40Q3U319 P2ry12-201ENSMUST00000050360 2250 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
Rnf40Q3U319 Vmn1r6-207ENSMUST00000228285 7950 ntAPPRIS P2 BASIC5.69□□□□□ -1.5
Rnf40Q3U319 Olfr1406-203ENSMUST00000215878 3149 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
Rnf40Q3U319 Olfr1226-203ENSMUST00000215562 2669 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
Rnf40Q3U319 Abca16-202ENSMUST00000120490 5088 ntAPPRIS P5 TSL 5 BASIC5.69□□□□□ -1.5
Rnf40Q3U319 Nfia-205ENSMUST00000107062 9239 ntTSL 5 BASIC5.68□□□□□ -1.5
Rnf40Q3U319 Lrrc39-201ENSMUST00000029573 3087 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
Rnf40Q3U319 Gm2016-201ENSMUST00000110147 1766 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
Rnf40Q3U319 Nlrp5-203ENSMUST00000108441 3375 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
Rnf40Q3U319 Cep57l1-201ENSMUST00000019951 2177 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
Rnf40Q3U319 Traj37-201ENSMUST00000103705 60 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
Rnf40Q3U319 Gm23979-201ENSMUST00000104071 128 ntBASIC5.68□□□□□ -1.5
Rnf40Q3U319 Myl2-202ENSMUST00000111750 729 ntTSL 2 BASIC5.68□□□□□ -1.5
Rnf40Q3U319 Gm22952-201ENSMUST00000116720 120 ntBASIC5.68□□□□□ -1.5
Rnf40Q3U319 Gm22953-201ENSMUST00000116724 101 ntBASIC5.68□□□□□ -1.5
Rnf40Q3U319 Gm11673-201ENSMUST00000117846 331 ntBASIC5.68□□□□□ -1.5
Rnf40Q3U319 Gm15263-201ENSMUST00000121556 642 ntBASIC5.68□□□□□ -1.5
Rnf40Q3U319 2310016D23Rik-201ENSMUST00000130082 388 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
Rnf40Q3U319 Gm15870-201ENSMUST00000132657 644 ntTSL 3 BASIC5.68□□□□□ -1.5
Rnf40Q3U319 Gm11963-201ENSMUST00000149826 500 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
Rnf40Q3U319 Gm14325-202ENSMUST00000150650 310 ntTSL 2 BASIC5.68□□□□□ -1.5
Rnf40Q3U319 Gm16490-201ENSMUST00000165299 351 ntBASIC5.68□□□□□ -1.5
Rnf40Q3U319 Gm23806-201ENSMUST00000175157 109 ntBASIC5.68□□□□□ -1.5
Rnf40Q3U319 Vmn2r-ps17-201ENSMUST00000178733 375 ntBASIC5.68□□□□□ -1.5
Rnf40Q3U319 Gm27820-201ENSMUST00000183628 175 ntBASIC5.68□□□□□ -1.5
Rnf40Q3U319 Gm37636-201ENSMUST00000193583 359 ntBASIC5.68□□□□□ -1.5
Rnf40Q3U319 Gm37177-201ENSMUST00000193768 417 ntBASIC5.68□□□□□ -1.5
Rnf40Q3U319 Gm45750-201ENSMUST00000211966 354 ntBASIC5.68□□□□□ -1.5
Rnf40Q3U319 Gm45907-201ENSMUST00000213023 193 ntBASIC5.68□□□□□ -1.5
Rnf40Q3U319 Gm18413-201ENSMUST00000221573 655 ntBASIC5.68□□□□□ -1.5
Rnf40Q3U319 Olfr1467-201ENSMUST00000054687 927 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
Rnf40Q3U319 Lrrc51-202ENSMUST00000098236 949 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
Rnf40Q3U319 Olfr1489-202ENSMUST00000217182 11140 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
Rnf40Q3U319 Olfr1143-202ENSMUST00000099852 2028 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
Rnf40Q3U319 Fam126b-207ENSMUST00000161600 8685 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
Rnf40Q3U319 Pja2-203ENSMUST00000172733 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
Rnf40Q3U319 Nr1h5-201ENSMUST00000058899 2835 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
Rnf40Q3U319 Vmn1r90-202ENSMUST00000226264 7796 ntAPPRIS P2 BASIC5.68□□□□□ -1.5
Rnf40Q3U319 Cdk14-203ENSMUST00000115451 5145 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
Rnf40Q3U319 Gm43283-201ENSMUST00000199138 2548 ntBASIC5.68□□□□□ -1.5
Rnf40Q3U319 Gm26582-201ENSMUST00000181481 3135 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
Rnf40Q3U319 Ints12-201ENSMUST00000029650 3101 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
Rnf40Q3U319 Vmn1r86-204ENSMUST00000227700 5487 ntAPPRIS ALT2 BASIC5.68□□□□□ -1.5
Rnf40Q3U319 Olfr24-203ENSMUST00000216754 4327 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
Rnf40Q3U319 Olfr164-202ENSMUST00000216157 2792 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
Rnf40Q3U319 Zfp763-201ENSMUST00000087654 3407 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
Rnf40Q3U319 Vmn1r34-205ENSMUST00000227332 3075 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
Rnf40Q3U319 Gm6367-201ENSMUST00000178646 2464 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
Rnf40Q3U319 Sirpb1b-201ENSMUST00000091319 1499 ntAPPRIS P2 TSL 1 (best) BASIC5.67□□□□□ -1.5
Rnf40Q3U319 Ighv1-16-201ENSMUST00000103501 294 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
Rnf40Q3U319 Ighv1-39-201ENSMUST00000103515 351 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
Rnf40Q3U319 Gm11804-201ENSMUST00000121663 468 ntBASIC5.67□□□□□ -1.5
Rnf40Q3U319 Etaa1os-201ENSMUST00000140161 550 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
Rnf40Q3U319 Gm12279-201ENSMUST00000142533 294 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
Retrieved 100 of 76,532 protein–RNA pairs in 102.2 ms