Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm7905-201ENSMUST00000119933 1386 ntBASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 Gm6207-201ENSMUST00000120075 1386 ntBASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 Gm6228-201ENSMUST00000178856 1386 ntBASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 Gm6221-201ENSMUST00000180064 1386 ntBASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 2610002M06Rik-201ENSMUST00000120722 5842 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 9130208D14Rik-201ENSMUST00000146911 7293 ntBASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 Gm3623-201ENSMUST00000173643 2747 ntBASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 Zfp955a-201ENSMUST00000008830 1638 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
Ddb1Q3U1J4 Gm43705-201ENSMUST00000195958 3717 ntBASIC4.86□□□□□ -1.63
Ddb1Q3U1J4 Zfp600-204ENSMUST00000168483 4244 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
Ddb1Q3U1J4 Senp8-201ENSMUST00000051039 3682 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
Ddb1Q3U1J4 Gm25088-201ENSMUST00000101803 79 ntBASIC4.86□□□□□ -1.63
Ddb1Q3U1J4 Traj2-201ENSMUST00000103738 66 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
Ddb1Q3U1J4 Gm22023-201ENSMUST00000104354 130 ntBASIC4.86□□□□□ -1.63
Ddb1Q3U1J4 Gm14915-201ENSMUST00000120747 204 ntBASIC4.86□□□□□ -1.63
Ddb1Q3U1J4 Gm23538-201ENSMUST00000157535 101 ntBASIC4.86□□□□□ -1.63
Ddb1Q3U1J4 Gm22219-201ENSMUST00000157562 319 ntBASIC4.86□□□□□ -1.63
Ddb1Q3U1J4 Gm25519-201ENSMUST00000158392 127 ntBASIC4.86□□□□□ -1.63
Ddb1Q3U1J4 Gm25163-201ENSMUST00000158905 104 ntBASIC4.86□□□□□ -1.63
Ddb1Q3U1J4 Ubl5-209ENSMUST00000161882 489 ntTSL 3 BASIC4.86□□□□□ -1.63
Ddb1Q3U1J4 Rpl30-ps6-201ENSMUST00000163337 348 ntBASIC4.86□□□□□ -1.63
Ddb1Q3U1J4 Gm25670-201ENSMUST00000178423 107 ntBASIC4.86□□□□□ -1.63
Ddb1Q3U1J4 Gm26239-201ENSMUST00000178842 107 ntBASIC4.86□□□□□ -1.63
Ddb1Q3U1J4 Gm24267-201ENSMUST00000179841 107 ntBASIC4.86□□□□□ -1.63
Ddb1Q3U1J4 Gm28404-201ENSMUST00000190242 453 ntBASIC4.86□□□□□ -1.63
Ddb1Q3U1J4 Gm28337-201ENSMUST00000190425 666 ntBASIC4.86□□□□□ -1.63
Ddb1Q3U1J4 Csn1s2a-203ENSMUST00000196749 917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
Ddb1Q3U1J4 AL513022.1-201ENSMUST00000220489 504 ntTSL 5 BASIC4.86□□□□□ -1.63
Ddb1Q3U1J4 Dnah7b-201ENSMUST00000069293 12314 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
Ddb1Q3U1J4 Gm24292-201ENSMUST00000082888 107 ntBASIC4.86□□□□□ -1.63
Ddb1Q3U1J4 Vmn1r81-201ENSMUST00000086232 921 ntAPPRIS P2 BASIC4.86□□□□□ -1.63
Ddb1Q3U1J4 Olfr1042-202ENSMUST00000215624 5096 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
Ddb1Q3U1J4 Aspn-202ENSMUST00000177948 2329 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
Ddb1Q3U1J4 Vmn2r91-201ENSMUST00000172359 2571 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
Ddb1Q3U1J4 Atrx-202ENSMUST00000113573 10275 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
Ddb1Q3U1J4 Olfr988-202ENSMUST00000111597 1702 ntAPPRIS P1 TSL 3 BASIC4.86□□□□□ -1.63
Ddb1Q3U1J4 4932438A13Rik-217ENSMUST00000152564 15541 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
Ddb1Q3U1J4 Trappc13-205ENSMUST00000144060 3538 ntAPPRIS ALT1 TSL 1 (best) BASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Olfr1484-205ENSMUST00000216369 3764 ntTSL 5 BASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Pde1a-205ENSMUST00000102654 4122 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Gm37195-201ENSMUST00000192006 3018 ntBASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Olfr575-203ENSMUST00000216420 3500 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Gm23747-201ENSMUST00000104228 131 ntBASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Gm4758-201ENSMUST00000114851 291 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Gm25315-201ENSMUST00000116823 121 ntBASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Gm11262-201ENSMUST00000119326 833 ntBASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Gm14516-201ENSMUST00000120012 252 ntBASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Gm11830-201ENSMUST00000120175 561 ntBASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Gm14366-201ENSMUST00000121970 730 ntBASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Gm15643-201ENSMUST00000126556 383 ntTSL 3 BASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Gm24244-201ENSMUST00000157317 130 ntBASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Gm25706-201ENSMUST00000157828 247 ntBASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Gm20399-201ENSMUST00000174652 132 ntBASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Gm27903-201ENSMUST00000175482 126 ntBASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Mir6917-201ENSMUST00000184111 61 ntBASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Mir7081-201ENSMUST00000184490 75 ntBASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Gm29380-201ENSMUST00000185898 416 ntTSL 5 BASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Rhoay-ps1-201ENSMUST00000191243 581 ntBASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Gm37892-201ENSMUST00000192018 437 ntTSL 3 BASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Gm36984-201ENSMUST00000192770 235 ntBASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Gm13266-203ENSMUST00000193364 421 ntTSL 3 BASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Gm28724-202ENSMUST00000194218 295 ntBASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Gm19418-201ENSMUST00000197436 580 ntBASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Gm43007-201ENSMUST00000197618 291 ntBASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Gm44084-201ENSMUST00000203947 409 ntBASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 4930595L18Rik-201ENSMUST00000204069 506 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Gm7726-201ENSMUST00000206241 231 ntBASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 AC166060.1-201ENSMUST00000213509 425 ntTSL 5 BASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 AC158641.1-201ENSMUST00000218933 229 ntBASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 AC164117.2-201ENSMUST00000222090 327 ntBASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 AC158392.2-201ENSMUST00000225402 969 ntBASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 mt-Tr-201ENSMUST00000082412 68 ntBASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Gm24626-201ENSMUST00000082621 161 ntBASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Olfr203-201ENSMUST00000089305 924 ntBASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Mir504-201ENSMUST00000093602 79 ntBASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Gm10717-202ENSMUST00000099042 669 ntAPPRIS P5 TSL 5 BASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Vmn1r228-201ENSMUST00000072410 1443 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 AC163660.3-201ENSMUST00000224253 1563 ntBASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Gm5798-201ENSMUST00000164613 1751 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Gm45030-201ENSMUST00000207575 1774 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Phex-201ENSMUST00000079945 6265 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Gm43881-201ENSMUST00000203051 2530 ntBASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Fam46d-204ENSMUST00000167154 3004 ntAPPRIS P1 TSL 3 BASIC4.85□□□□□ -1.63
Ddb1Q3U1J4 Zfp458-201ENSMUST00000045969 3488 ntAPPRIS P2 TSL 1 (best) BASIC4.84□□□□□ -1.63
Ddb1Q3U1J4 Gm43010-201ENSMUST00000195993 2878 ntBASIC4.84□□□□□ -1.63
Ddb1Q3U1J4 Zfp85-202ENSMUST00000144183 2312 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
Ddb1Q3U1J4 Gm12492-201ENSMUST00000117665 564 ntBASIC4.84□□□□□ -1.63
Ddb1Q3U1J4 Gm14362-201ENSMUST00000121679 273 ntBASIC4.84□□□□□ -1.63
Ddb1Q3U1J4 Zfp950-205ENSMUST00000148569 192 ntTSL 5 BASIC4.84□□□□□ -1.63
Ddb1Q3U1J4 Gm15254-201ENSMUST00000149567 273 ntBASIC4.84□□□□□ -1.63
Ddb1Q3U1J4 Gm24138-201ENSMUST00000157572 114 ntBASIC4.84□□□□□ -1.63
Ddb1Q3U1J4 Gm22968-201ENSMUST00000157955 118 ntBASIC4.84□□□□□ -1.63
Ddb1Q3U1J4 Gm24901-201ENSMUST00000158125 110 ntBASIC4.84□□□□□ -1.63
Ddb1Q3U1J4 Gm22836-201ENSMUST00000158441 61 ntBASIC4.84□□□□□ -1.63
Ddb1Q3U1J4 Gm25365-201ENSMUST00000158852 121 ntBASIC4.84□□□□□ -1.63
Ddb1Q3U1J4 Gm16043-201ENSMUST00000160030 616 ntTSL 3 BASIC4.84□□□□□ -1.63
Ddb1Q3U1J4 Cfap54-204ENSMUST00000164979 945 ntTSL 5 BASIC4.84□□□□□ -1.63
Ddb1Q3U1J4 Gm21758-201ENSMUST00000179336 819 ntBASIC4.84□□□□□ -1.63
Ddb1Q3U1J4 Tmsb15b2-202ENSMUST00000180194 243 ntAPPRIS P1 TSL 3 BASIC4.84□□□□□ -1.63
Ddb1Q3U1J4 Jpx-201ENSMUST00000181020 3802 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
Retrieved 100 of 76,532 protein–RNA pairs in 82.8 ms