Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 4930451E10Rik-201ENSMUST00000130840 409 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
ShhQ62226 Gm23473-201ENSMUST00000158883 116 ntBASIC3.81□□□□□ -1.8
ShhQ62226 Gm9071-201ENSMUST00000165915 474 ntBASIC3.81□□□□□ -1.8
ShhQ62226 Mir1251-201ENSMUST00000175486 84 ntBASIC3.81□□□□□ -1.8
ShhQ62226 Gm21518-201ENSMUST00000178115 567 ntTSL 5 BASIC3.81□□□□□ -1.8
ShhQ62226 Gm20736-201ENSMUST00000178198 567 ntTSL 5 BASIC3.81□□□□□ -1.8
ShhQ62226 Gm20843-201ENSMUST00000178505 567 ntTSL 5 BASIC3.81□□□□□ -1.8
ShhQ62226 Gm21209-201ENSMUST00000178556 567 ntTSL 5 BASIC3.81□□□□□ -1.8
ShhQ62226 Gm21258-201ENSMUST00000178673 567 ntTSL 5 BASIC3.81□□□□□ -1.8
ShhQ62226 Gm21650-201ENSMUST00000179073 567 ntTSL 5 BASIC3.81□□□□□ -1.8
ShhQ62226 Gm20937-201ENSMUST00000180329 567 ntTSL 5 BASIC3.81□□□□□ -1.8
ShhQ62226 Gm27222-201ENSMUST00000183398 427 ntTSL 5 BASIC3.81□□□□□ -1.8
ShhQ62226 Gm29322-201ENSMUST00000185378 582 ntTSL 5 BASIC3.81□□□□□ -1.8
ShhQ62226 Gm29216-201ENSMUST00000187117 492 ntBASIC3.81□□□□□ -1.8
ShhQ62226 Gm10193-201ENSMUST00000188288 231 ntBASIC3.81□□□□□ -1.8
ShhQ62226 Ms4a4a-201ENSMUST00000188995 836 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
ShhQ62226 Gm34015-201ENSMUST00000194908 451 ntBASIC3.81□□□□□ -1.8
ShhQ62226 Gm42758-201ENSMUST00000202146 283 ntBASIC3.81□□□□□ -1.8
ShhQ62226 E330011O21Rik-203ENSMUST00000210555 455 ntTSL 5 BASIC3.81□□□□□ -1.8
ShhQ62226 Gm45400-201ENSMUST00000211603 653 ntBASIC3.81□□□□□ -1.8
ShhQ62226 Olfr908-201ENSMUST00000215139 932 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
ShhQ62226 CT572983.1-201ENSMUST00000226895 514 ntBASIC3.81□□□□□ -1.8
ShhQ62226 AC155167.1-201ENSMUST00000228931 614 ntBASIC3.81□□□□□ -1.8
ShhQ62226 Vmn1r79-201ENSMUST00000062811 921 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
ShhQ62226 Gm23242-201ENSMUST00000083055 107 ntBASIC3.81□□□□□ -1.8
ShhQ62226 Olfr689-201ENSMUST00000098153 1076 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
ShhQ62226 Olfr875-202ENSMUST00000215128 2039 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
ShhQ62226 BC002059-202ENSMUST00000190415 1964 ntTSL 2 BASIC3.81□□□□□ -1.8
ShhQ62226 Olfr1101-202ENSMUST00000214411 3235 ntAPPRIS P1 TSL 3 BASIC3.81□□□□□ -1.8
ShhQ62226 Olfr354-202ENSMUST00000217479 9539 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
ShhQ62226 Olfr933-202ENSMUST00000216238 4475 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
ShhQ62226 Zfp101-204ENSMUST00000174512 3743 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
ShhQ62226 Gm43705-201ENSMUST00000195958 3717 ntBASIC3.81□□□□□ -1.8
ShhQ62226 Gprc6a-201ENSMUST00000020062 2856 ntAPPRIS P2 TSL 1 (best) BASIC3.81□□□□□ -1.8
ShhQ62226 Gm44435-201ENSMUST00000204379 4119 ntBASIC3.8□□□□□ -1.8
ShhQ62226 Sucnr1-201ENSMUST00000029326 1571 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
ShhQ62226 Gm29674-202ENSMUST00000219664 4083 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
ShhQ62226 Mga-204ENSMUST00000110774 13931 ntAPPRIS P3 TSL 5 BASIC3.8□□□□□ -1.8
ShhQ62226 Olfr1180-203ENSMUST00000217320 2107 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
ShhQ62226 Gm36951-201ENSMUST00000193840 2687 ntBASIC3.8□□□□□ -1.8
ShhQ62226 Olfr1317-203ENSMUST00000214801 2578 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
ShhQ62226 Cep295-208ENSMUST00000161132 7605 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
ShhQ62226 Olfr716-207ENSMUST00000216871 4062 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
ShhQ62226 Gm11284-201ENSMUST00000121910 1887 ntBASIC3.8□□□□□ -1.8
ShhQ62226 Olfr826-203ENSMUST00000216661 2858 ntAPPRIS P1 TSL 3 BASIC3.8□□□□□ -1.8
ShhQ62226 Gm23744-201ENSMUST00000104231 149 ntBASIC3.8□□□□□ -1.8
ShhQ62226 Gm22497-201ENSMUST00000104499 131 ntBASIC3.8□□□□□ -1.8
ShhQ62226 Gm14880-201ENSMUST00000117581 292 ntBASIC3.8□□□□□ -1.8
ShhQ62226 Sult2a-ps3-201ENSMUST00000117899 428 ntBASIC3.8□□□□□ -1.8
ShhQ62226 Gm14359-201ENSMUST00000118883 424 ntBASIC3.8□□□□□ -1.8
ShhQ62226 Gm13804-201ENSMUST00000119552 172 ntBASIC3.8□□□□□ -1.8
ShhQ62226 Gm13239-201ENSMUST00000119920 637 ntBASIC3.8□□□□□ -1.8
ShhQ62226 Hmgb1-ps5-201ENSMUST00000121058 557 ntBASIC3.8□□□□□ -1.8
ShhQ62226 Gm9498-201ENSMUST00000140849 291 ntBASIC3.8□□□□□ -1.8
ShhQ62226 Gm12898-201ENSMUST00000144407 642 ntTSL 3 BASIC3.8□□□□□ -1.8
ShhQ62226 Gm13661-201ENSMUST00000154297 318 ntTSL 3 BASIC3.8□□□□□ -1.8
ShhQ62226 Gm22563-201ENSMUST00000157333 269 ntBASIC3.8□□□□□ -1.8
ShhQ62226 Gm26348-201ENSMUST00000157528 240 ntBASIC3.8□□□□□ -1.8
ShhQ62226 Vmn1r-ps32-201ENSMUST00000174389 956 ntBASIC3.8□□□□□ -1.8
ShhQ62226 Gm23215-201ENSMUST00000178153 121 ntBASIC3.8□□□□□ -1.8
ShhQ62226 Gm27189-201ENSMUST00000184119 190 ntBASIC3.8□□□□□ -1.8
ShhQ62226 Gm18403-201ENSMUST00000192907 529 ntBASIC3.8□□□□□ -1.8
ShhQ62226 Gm37353-201ENSMUST00000194497 313 ntBASIC3.8□□□□□ -1.8
ShhQ62226 Gm9227-201ENSMUST00000194733 566 ntBASIC3.8□□□□□ -1.8
ShhQ62226 Gm43617-201ENSMUST00000196418 606 ntTSL 2 BASIC3.8□□□□□ -1.8
ShhQ62226 Rpl18a-ps2-201ENSMUST00000197158 174 ntBASIC3.8□□□□□ -1.8
ShhQ62226 Gm42453-201ENSMUST00000200477 409 ntBASIC3.8□□□□□ -1.8
ShhQ62226 Igkv13-74-1-201ENSMUST00000200611 242 ntBASIC3.8□□□□□ -1.8
ShhQ62226 Gm42475-201ENSMUST00000201212 295 ntBASIC3.8□□□□□ -1.8
ShhQ62226 Olfr1401-ps1-201ENSMUST00000202296 211 ntBASIC3.8□□□□□ -1.8
ShhQ62226 Gm8132-201ENSMUST00000204938 640 ntBASIC3.8□□□□□ -1.8
ShhQ62226 2200007N16Rik-201ENSMUST00000206367 238 ntBASIC3.8□□□□□ -1.8
ShhQ62226 4930598N05Rik-201ENSMUST00000207048 550 ntTSL 5 BASIC3.8□□□□□ -1.8
ShhQ62226 Gm37797-201ENSMUST00000212114 815 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
ShhQ62226 AC152946.2-201ENSMUST00000219071 337 ntBASIC3.8□□□□□ -1.8
ShhQ62226 Gm35558-203ENSMUST00000222264 204 ntBASIC3.8□□□□□ -1.8
ShhQ62226 Gm7984-201ENSMUST00000060640 538 ntBASIC3.8□□□□□ -1.8
ShhQ62226 Snora7a-201ENSMUST00000082629 140 ntBASIC3.8□□□□□ -1.8
ShhQ62226 Cd300ld2-201ENSMUST00000092463 381 ntTSL 5 BASIC3.8□□□□□ -1.8
ShhQ62226 4932415D10Rik-202ENSMUST00000217661 15111 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
ShhQ62226 Vmn1r89-204ENSMUST00000227239 1992 ntAPPRIS P2 BASIC3.8□□□□□ -1.8
ShhQ62226 Gm37903-201ENSMUST00000192122 2381 ntBASIC3.8□□□□□ -1.8
ShhQ62226 Tex47-202ENSMUST00000159546 1402 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
ShhQ62226 Gm14936-201ENSMUST00000137765 2621 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
ShhQ62226 4930562D21Rik-201ENSMUST00000123894 1750 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
ShhQ62226 Gm32647-201ENSMUST00000206116 3288 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
ShhQ62226 Olfr815-202ENSMUST00000216182 2881 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
ShhQ62226 Olfr148-202ENSMUST00000216801 2775 ntAPPRIS P1 TSL 5 BASIC3.79□□□□□ -1.8
ShhQ62226 Bsph2-201ENSMUST00000108526 532 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
ShhQ62226 Gm8666-201ENSMUST00000117517 292 ntBASIC3.79□□□□□ -1.8
ShhQ62226 Gm13064-201ENSMUST00000119125 557 ntBASIC3.79□□□□□ -1.8
ShhQ62226 Hmgb1-ps6-201ENSMUST00000119503 616 ntBASIC3.79□□□□□ -1.8
ShhQ62226 Gm14714-201ENSMUST00000119743 439 ntBASIC3.79□□□□□ -1.8
ShhQ62226 Olfr406-201ENSMUST00000133561 1101 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
ShhQ62226 Gm12649-201ENSMUST00000137509 581 ntTSL 3 BASIC3.79□□□□□ -1.8
ShhQ62226 Grip1os2-201ENSMUST00000153898 722 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
ShhQ62226 Gm22597-201ENSMUST00000157602 80 ntBASIC3.79□□□□□ -1.8
ShhQ62226 Ap3m1-ps-201ENSMUST00000177652 1258 ntBASIC3.79□□□□□ -1.8
ShhQ62226 Gm22631-201ENSMUST00000179656 94 ntBASIC3.79□□□□□ -1.8
ShhQ62226 Vmn1r181-201ENSMUST00000181796 1080 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
Retrieved 100 of 76,532 protein–RNA pairs in 90.2 ms