Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm15551-201ENSMUST00000132762 535 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
Rnf40Q3U319 Gm23312-201ENSMUST00000158774 102 ntBASIC5.73□□□□□ -1.49
Rnf40Q3U319 Gm17187-201ENSMUST00000164622 410 ntBASIC5.73□□□□□ -1.49
Rnf40Q3U319 Gtpbp4-ps1-201ENSMUST00000184732 249 ntBASIC5.73□□□□□ -1.49
Rnf40Q3U319 Olfr1406-202ENSMUST00000201132 2952 ntAPPRIS P1 TSL 3 BASIC5.73□□□□□ -1.49
Rnf40Q3U319 Gm15927-204ENSMUST00000206075 372 ntTSL 3 BASIC5.73□□□□□ -1.49
Rnf40Q3U319 Gm45626-201ENSMUST00000210093 361 ntBASIC5.73□□□□□ -1.49
Rnf40Q3U319 Rpl17-ps2-201ENSMUST00000218101 532 ntBASIC5.73□□□□□ -1.49
Rnf40Q3U319 AC091783.5-201ENSMUST00000224928 671 ntBASIC5.73□□□□□ -1.49
Rnf40Q3U319 AC154573.1-201ENSMUST00000225913 4659 ntBASIC5.73□□□□□ -1.49
Rnf40Q3U319 Gm8526-201ENSMUST00000079153 475 ntBASIC5.73□□□□□ -1.49
Rnf40Q3U319 Gm22684-201ENSMUST00000082849 132 ntBASIC5.73□□□□□ -1.49
Rnf40Q3U319 n-R5s69-201ENSMUST00000083872 119 ntBASIC5.73□□□□□ -1.49
Rnf40Q3U319 Vmn2r3-201ENSMUST00000170244 2670 ntAPPRIS P2 TSL 5 BASIC5.73□□□□□ -1.49
Rnf40Q3U319 Olfr1200-202ENSMUST00000217588 4996 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
Rnf40Q3U319 Gm26753-201ENSMUST00000181938 2731 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
Rnf40Q3U319 Gm19950-204ENSMUST00000208167 4196 ntTSL 5 BASIC5.73□□□□□ -1.49
Rnf40Q3U319 Olfr875-202ENSMUST00000215128 2039 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
Rnf40Q3U319 Gm884-201ENSMUST00000059279 10977 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
Rnf40Q3U319 Vmn1r210-203ENSMUST00000226294 3500 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
Rnf40Q3U319 Zfp644-201ENSMUST00000045466 5569 ntAPPRIS P2 TSL 1 (best) BASIC5.72□□□□□ -1.49
Rnf40Q3U319 4732416N19Rik-201ENSMUST00000203932 3479 ntBASIC5.72□□□□□ -1.49
Rnf40Q3U319 Gm23319-201ENSMUST00000104467 131 ntBASIC5.72□□□□□ -1.49
Rnf40Q3U319 Insl5-202ENSMUST00000106869 438 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
Rnf40Q3U319 Gm11445-201ENSMUST00000119101 532 ntBASIC5.72□□□□□ -1.49
Rnf40Q3U319 Gm15022-201ENSMUST00000122074 746 ntBASIC5.72□□□□□ -1.49
Rnf40Q3U319 n-R5s192-201ENSMUST00000122577 119 ntBASIC5.72□□□□□ -1.49
Rnf40Q3U319 Gm25826-201ENSMUST00000157090 137 ntBASIC5.72□□□□□ -1.49
Rnf40Q3U319 Gm23903-201ENSMUST00000157566 131 ntBASIC5.72□□□□□ -1.49
Rnf40Q3U319 Mir1953-201ENSMUST00000157866 89 ntBASIC5.72□□□□□ -1.49
Rnf40Q3U319 Gm22315-201ENSMUST00000158010 143 ntBASIC5.72□□□□□ -1.49
Rnf40Q3U319 Gm24733-201ENSMUST00000158863 253 ntBASIC5.72□□□□□ -1.49
Rnf40Q3U319 Gm9285-201ENSMUST00000177691 697 ntBASIC5.72□□□□□ -1.49
Rnf40Q3U319 Gm25020-201ENSMUST00000178071 107 ntBASIC5.72□□□□□ -1.49
Rnf40Q3U319 Speer4c-202ENSMUST00000179506 480 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
Rnf40Q3U319 Gm26701-201ENSMUST00000181571 234 ntBASIC5.72□□□□□ -1.49
Rnf40Q3U319 Mir6911-201ENSMUST00000184241 69 ntBASIC5.72□□□□□ -1.49
Rnf40Q3U319 Gm27601-201ENSMUST00000184794 127 ntBASIC5.72□□□□□ -1.49
Rnf40Q3U319 Gm18444-201ENSMUST00000191239 629 ntBASIC5.72□□□□□ -1.49
Rnf40Q3U319 4930526M16Rik-201ENSMUST00000197305 954 ntBASIC5.72□□□□□ -1.49
Rnf40Q3U319 AC117240.1-201ENSMUST00000199436 61 ntBASIC5.72□□□□□ -1.49
Rnf40Q3U319 Gm4763-202ENSMUST00000205376 807 ntTSL 3 BASIC5.72□□□□□ -1.49
Rnf40Q3U319 Gm7726-201ENSMUST00000206241 231 ntBASIC5.72□□□□□ -1.49
Rnf40Q3U319 AC123803.1-201ENSMUST00000216093 189 ntBASIC5.72□□□□□ -1.49
Rnf40Q3U319 AC168056.2-201ENSMUST00000223591 269 ntBASIC5.72□□□□□ -1.49
Rnf40Q3U319 AC154335.2-201ENSMUST00000225916 638 ntBASIC5.72□□□□□ -1.49
Rnf40Q3U319 Gm22062-201ENSMUST00000082563 107 ntBASIC5.72□□□□□ -1.49
Rnf40Q3U319 Mir32-201ENSMUST00000083610 70 ntBASIC5.72□□□□□ -1.49
Rnf40Q3U319 Gm22351-201ENSMUST00000083925 107 ntBASIC5.72□□□□□ -1.49
Rnf40Q3U319 Gm10351-201ENSMUST00000087694 125 ntBASIC5.72□□□□□ -1.49
Rnf40Q3U319 Zfp846-201ENSMUST00000060063 1626 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
Rnf40Q3U319 Chrna6-201ENSMUST00000033882 2906 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
Rnf40Q3U319 Vmn2r101-201ENSMUST00000171914 2574 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
Rnf40Q3U319 Vmn1r39-203ENSMUST00000227285 2245 ntAPPRIS ALT2 BASIC5.72□□□□□ -1.49
Rnf40Q3U319 Sirpb1c-204ENSMUST00000108352 1436 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
Rnf40Q3U319 Mmp1a-202ENSMUST00000217651 2011 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
Rnf40Q3U319 Ccr5-202ENSMUST00000111442 8227 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
Rnf40Q3U319 Olfr1286-203ENSMUST00000213210 3740 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
Rnf40Q3U319 Ifi206-201ENSMUST00000160565 3047 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
Rnf40Q3U319 Pi15-201ENSMUST00000088476 6923 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
Rnf40Q3U319 Akr1c14-202ENSMUST00000118717 3183 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.49
Rnf40Q3U319 Gm3584-201ENSMUST00000173822 2565 ntBASIC5.71□□□□□ -1.49
Rnf40Q3U319 Wnk3-206ENSMUST00000184730 5253 ntAPPRIS ALT2 TSL 1 (best) BASIC5.71□□□□□ -1.49
Rnf40Q3U319 Gm2099-202ENSMUST00000223310 3341 ntBASIC5.71□□□□□ -1.49
Rnf40Q3U319 Psg25-201ENSMUST00000094795 3109 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
Rnf40Q3U319 Abcg3-201ENSMUST00000031239 3035 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
Rnf40Q3U319 Vmn2r95-201ENSMUST00000166327 2538 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
Rnf40Q3U319 Dsc1-202ENSMUST00000224432 4085 ntAPPRIS ALT2 BASIC5.71□□□□□ -1.5
Rnf40Q3U319 Gm25345-201ENSMUST00000104505 133 ntBASIC5.71□□□□□ -1.5
Rnf40Q3U319 Apoa2-203ENSMUST00000111320 470 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
Rnf40Q3U319 Gm14304-201ENSMUST00000117272 446 ntBASIC5.71□□□□□ -1.5
Rnf40Q3U319 Gm15493-201ENSMUST00000119461 528 ntBASIC5.71□□□□□ -1.5
Rnf40Q3U319 Gm12488-201ENSMUST00000122449 499 ntBASIC5.71□□□□□ -1.5
Rnf40Q3U319 Gm11415-201ENSMUST00000128214 480 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
Rnf40Q3U319 Gm12325-201ENSMUST00000135553 320 ntTSL 5 BASIC5.71□□□□□ -1.5
Rnf40Q3U319 Gm23584-201ENSMUST00000157655 129 ntBASIC5.71□□□□□ -1.5
Rnf40Q3U319 Smdt1-202ENSMUST00000159054 294 ntTSL 5 BASIC5.71□□□□□ -1.5
Rnf40Q3U319 Gm17224-201ENSMUST00000171429 500 ntTSL 3 BASIC5.71□□□□□ -1.5
Rnf40Q3U319 Gm20454-201ENSMUST00000172713 221 ntBASIC5.71□□□□□ -1.5
Rnf40Q3U319 Gm24949-201ENSMUST00000183609 215 ntBASIC5.71□□□□□ -1.5
Rnf40Q3U319 Gm28385-201ENSMUST00000185671 292 ntBASIC5.71□□□□□ -1.5
Rnf40Q3U319 1700067G17Rik-201ENSMUST00000186180 603 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
Rnf40Q3U319 Gm6651-201ENSMUST00000189471 271 ntBASIC5.71□□□□□ -1.5
Rnf40Q3U319 Gm37162-201ENSMUST00000191708 551 ntBASIC5.71□□□□□ -1.5
Rnf40Q3U319 Gm3970-201ENSMUST00000198001 334 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
Rnf40Q3U319 Gm44214-201ENSMUST00000204153 606 ntBASIC5.71□□□□□ -1.5
Rnf40Q3U319 Gm36696-201ENSMUST00000205418 438 ntTSL 2 BASIC5.71□□□□□ -1.5
Rnf40Q3U319 Olfr468-ps1-201ENSMUST00000207203 593 ntBASIC5.71□□□□□ -1.5
Rnf40Q3U319 AC124581.4-201ENSMUST00000225874 463 ntBASIC5.71□□□□□ -1.5
Rnf40Q3U319 AC115735.2-201ENSMUST00000227135 351 ntBASIC5.71□□□□□ -1.5
Rnf40Q3U319 Vmn2r5-202ENSMUST00000177184 2736 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
Rnf40Q3U319 Zfp120-203ENSMUST00000109931 4033 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
Rnf40Q3U319 Olfr1311-202ENSMUST00000213602 2631 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
Rnf40Q3U319 Eya4-201ENSMUST00000074366 3488 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
Rnf40Q3U319 Mctp1-201ENSMUST00000109583 2283 ntAPPRIS P2 TSL 5 BASIC5.71□□□□□ -1.5
Rnf40Q3U319 Lgalsl-201ENSMUST00000047028 3362 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
Rnf40Q3U319 Gm37764-201ENSMUST00000194664 2150 ntBASIC5.7□□□□□ -1.5
Rnf40Q3U319 Jpx-201ENSMUST00000181020 3802 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
Rnf40Q3U319 Gm5615-201ENSMUST00000098900 2348 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
Rnf40Q3U319 Tsga10-207ENSMUST00000155852 2861 ntAPPRIS ALT2 TSL 1 (best) BASIC5.7□□□□□ -1.5
Retrieved 100 of 76,532 protein–RNA pairs in 80.3 ms