Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm15926-201ENSMUST00000120492 550 ntBASIC4.89□□□□□ -1.63
Ddb1Q3U1J4 Mup-ps12-201ENSMUST00000126217 549 ntBASIC4.89□□□□□ -1.63
Ddb1Q3U1J4 Gm14161-201ENSMUST00000137020 339 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
Ddb1Q3U1J4 Gm23960-201ENSMUST00000157206 131 ntBASIC4.89□□□□□ -1.63
Ddb1Q3U1J4 Gm25860-201ENSMUST00000158252 126 ntBASIC4.89□□□□□ -1.63
Ddb1Q3U1J4 Gm25369-201ENSMUST00000158848 132 ntBASIC4.89□□□□□ -1.63
Ddb1Q3U1J4 Rpl23a-ps8-201ENSMUST00000186144 463 ntBASIC4.89□□□□□ -1.63
Ddb1Q3U1J4 Gm29045-201ENSMUST00000187278 698 ntBASIC4.89□□□□□ -1.63
Ddb1Q3U1J4 Gm20832-201ENSMUST00000189076 665 ntBASIC4.89□□□□□ -1.63
Ddb1Q3U1J4 Gm29334-201ENSMUST00000190334 357 ntBASIC4.89□□□□□ -1.63
Ddb1Q3U1J4 Gm28179-203ENSMUST00000191382 544 ntTSL 5 BASIC4.89□□□□□ -1.63
Ddb1Q3U1J4 Gm19694-201ENSMUST00000192364 505 ntBASIC4.89□□□□□ -1.63
Ddb1Q3U1J4 Gm30638-201ENSMUST00000195570 656 ntBASIC4.89□□□□□ -1.63
Ddb1Q3U1J4 Gm37119-201ENSMUST00000195691 389 ntBASIC4.89□□□□□ -1.63
Ddb1Q3U1J4 Gm36728-201ENSMUST00000195782 665 ntBASIC4.89□□□□□ -1.63
Ddb1Q3U1J4 Smr2-202ENSMUST00000196070 813 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
Ddb1Q3U1J4 Gm42832-201ENSMUST00000196361 745 ntBASIC4.89□□□□□ -1.63
Ddb1Q3U1J4 Gm43470-202ENSMUST00000198573 227 ntTSL 3 BASIC4.89□□□□□ -1.63
Ddb1Q3U1J4 Gm44923-201ENSMUST00000206673 85 ntBASIC4.89□□□□□ -1.63
Ddb1Q3U1J4 Gm45049-201ENSMUST00000207586 591 ntBASIC4.89□□□□□ -1.63
Ddb1Q3U1J4 Olfr638-201ENSMUST00000209757 966 ntAPPRIS P2 BASIC4.89□□□□□ -1.63
Ddb1Q3U1J4 Gm39197-201ENSMUST00000212069 457 ntBASIC4.89□□□□□ -1.63
Ddb1Q3U1J4 Gm7495-201ENSMUST00000215099 426 ntBASIC4.89□□□□□ -1.63
Ddb1Q3U1J4 AC087891.1-201ENSMUST00000217867 318 ntTSL 5 BASIC4.89□□□□□ -1.63
Ddb1Q3U1J4 Gm9762-201ENSMUST00000036976 444 ntBASIC4.89□□□□□ -1.63
Ddb1Q3U1J4 Sprr2f-201ENSMUST00000050397 609 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
Ddb1Q3U1J4 Gm26206-201ENSMUST00000082908 110 ntBASIC4.89□□□□□ -1.63
Ddb1Q3U1J4 Gm7903-201ENSMUST00000113172 3677 ntAPPRIS P2 TSL 1 (best) BASIC4.89□□□□□ -1.63
Ddb1Q3U1J4 Gm5128-201ENSMUST00000113173 3677 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
Ddb1Q3U1J4 Olfr951-202ENSMUST00000216107 1947 ntAPPRIS ALT2 TSL 3 BASIC4.89□□□□□ -1.63
Ddb1Q3U1J4 Gm17752-201ENSMUST00000185787 3726 ntBASIC4.89□□□□□ -1.63
Ddb1Q3U1J4 Gm2093-201ENSMUST00000180518 3526 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
Ddb1Q3U1J4 Cftr-203ENSMUST00000115406 4341 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 Klra2-201ENSMUST00000032306 1799 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 Vmn1r66-203ENSMUST00000227719 2765 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 Gm15902-202ENSMUST00000219623 3477 ntBASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 AC167250.1-201ENSMUST00000213739 3813 ntBASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 Slfn8-202ENSMUST00000092838 3529 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 Clvs1-201ENSMUST00000038841 3604 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 Vmn1r184-202ENSMUST00000227230 7999 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 B830012L14Rik-201ENSMUST00000182785 4505 ntTSL 5 BASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 Gm14292-201ENSMUST00000118761 456 ntBASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 Gm12495-201ENSMUST00000119750 447 ntBASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 Rhox11-ps1-201ENSMUST00000121945 387 ntBASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 Gm12505-201ENSMUST00000146041 757 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 Gm13173-201ENSMUST00000151703 441 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 Gm24014-201ENSMUST00000157728 157 ntBASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 Obox1-203ENSMUST00000172881 821 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 Gm20612-201ENSMUST00000176318 236 ntBASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 Gm25194-201ENSMUST00000177987 79 ntBASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 Gm38316-201ENSMUST00000194838 469 ntTSL 5 BASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 Gm37587-202ENSMUST00000194935 475 ntTSL 3 BASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 Gm44376-201ENSMUST00000197570 128 ntBASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 2400006E01Rik-203ENSMUST00000199633 643 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 Smr2-204ENSMUST00000199635 680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 Gm30790-201ENSMUST00000208256 958 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 Gm34783-201ENSMUST00000209159 303 ntBASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 AC132344.1-201ENSMUST00000221289 376 ntTSL 3 BASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 Gm19441-201ENSMUST00000221545 330 ntBASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 AC156560.3-201ENSMUST00000222978 3841 ntBASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 AC102291.2-201ENSMUST00000228083 367 ntBASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 AC154532.2-201ENSMUST00000228947 598 ntBASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 Gm9765-201ENSMUST00000043170 321 ntBASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 Gm24533-201ENSMUST00000083138 196 ntBASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 Mir133a-2-201ENSMUST00000083526 104 ntBASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 Gm25008-201ENSMUST00000083809 81 ntBASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 Olfr291-202ENSMUST00000217039 3471 ntAPPRIS ALT2 TSL 2 BASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 Abi3bp-203ENSMUST00000096013 4495 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 Gm43834-201ENSMUST00000197097 4830 ntBASIC4.88□□□□□ -1.63
Ddb1Q3U1J4 Olfr586-202ENSMUST00000211075 4562 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 A530053G22Rik-201ENSMUST00000060147 1526 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 Agtr2-201ENSMUST00000089188 3283 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 Gm43320-201ENSMUST00000196047 2916 ntBASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 Gm45483-201ENSMUST00000209845 1682 ntBASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 Tcp11x2-201ENSMUST00000078605 1776 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 Gm1968-201ENSMUST00000100016 348 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 Gm5935-201ENSMUST00000101667 875 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 Hmgb1-ps5-201ENSMUST00000121058 557 ntBASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 Gm15949-201ENSMUST00000129485 126 ntTSL 3 BASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 Mir1946a-201ENSMUST00000158360 134 ntBASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 Gm20526-201ENSMUST00000173416 158 ntBASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 Sult2a6-202ENSMUST00000184731 664 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 Mir6914-201ENSMUST00000184999 69 ntBASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 Gm17946-201ENSMUST00000186856 538 ntBASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 Gm36934-201ENSMUST00000192007 306 ntBASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 Gm38093-201ENSMUST00000195210 710 ntTSL 3 BASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 Gm43043-201ENSMUST00000196579 412 ntBASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 AC154374.1-201ENSMUST00000215351 351 ntBASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 AC131720.2-201ENSMUST00000220420 431 ntBASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 Gm46312-201ENSMUST00000220961 420 ntBASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 AC159619.2-201ENSMUST00000222924 401 ntBASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 Gm40548-201ENSMUST00000223522 644 ntTSL 3 BASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 AC239878.1-201ENSMUST00000224212 506 ntBASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 Sprr2i-201ENSMUST00000047264 617 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 Olfr164-201ENSMUST00000056727 1095 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 Tgif2lx2-201ENSMUST00000072518 1030 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 Tmsb15a-201ENSMUST00000073674 299 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 Tgif2lx1-201ENSMUST00000073857 1030 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 Gm23503-201ENSMUST00000083903 107 ntBASIC4.87□□□□□ -1.63
Ddb1Q3U1J4 Gm5168-201ENSMUST00000089165 824 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
Retrieved 100 of 76,532 protein–RNA pairs in 93.5 ms