Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Tgif1-ps-201ENSMUST00000201864 736 ntBASIC3.83□□□□□ -1.8
ShhQ62226 Gm8820-201ENSMUST00000204077 571 ntBASIC3.83□□□□□ -1.8
ShhQ62226 Gm44649-201ENSMUST00000205608 364 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
ShhQ62226 Olfr1483-ps1-201ENSMUST00000208241 334 ntBASIC3.83□□□□□ -1.8
ShhQ62226 Gm44909-201ENSMUST00000208756 165 ntBASIC3.83□□□□□ -1.8
ShhQ62226 Olfr566-202ENSMUST00000209952 1066 ntAPPRIS ALT1 TSL 3 BASIC3.83□□□□□ -1.8
ShhQ62226 AC109212.1-201ENSMUST00000215561 427 ntBASIC3.83□□□□□ -1.8
ShhQ62226 Gm35371-201ENSMUST00000216204 579 ntTSL 5 BASIC3.83□□□□□ -1.8
ShhQ62226 AC163354.1-203ENSMUST00000222356 643 ntTSL 5 BASIC3.83□□□□□ -1.8
ShhQ62226 AC134577.1-201ENSMUST00000227572 295 ntBASIC3.83□□□□□ -1.8
ShhQ62226 AC164883.9-201ENSMUST00000228042 399 ntBASIC3.83□□□□□ -1.8
ShhQ62226 AC157772.2-201ENSMUST00000228202 259 ntBASIC3.83□□□□□ -1.8
ShhQ62226 AC117202.3-201ENSMUST00000228532 310 ntBASIC3.83□□□□□ -1.8
ShhQ62226 Olfr779-201ENSMUST00000069063 390 ntAPPRIS ALT2 BASIC3.83□□□□□ -1.8
ShhQ62226 Olfr566-201ENSMUST00000071393 951 ntAPPRIS P2 BASIC3.83□□□□□ -1.8
ShhQ62226 Vmn1r211-201ENSMUST00000073728 985 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
ShhQ62226 Olfr787-201ENSMUST00000077836 939 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
ShhQ62226 Snord38a-201ENSMUST00000083746 71 ntBASIC3.83□□□□□ -1.8
ShhQ62226 Gm22868-201ENSMUST00000083955 164 ntBASIC3.83□□□□□ -1.8
ShhQ62226 Btbd35f10-201ENSMUST00000178621 1952 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
ShhQ62226 Usp34-208ENSMUST00000180046 12200 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
ShhQ62226 Pds5b-203ENSMUST00000110486 2900 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
ShhQ62226 Gm43259-201ENSMUST00000198446 3277 ntBASIC3.83□□□□□ -1.8
ShhQ62226 Olfr728-202ENSMUST00000213685 7087 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
ShhQ62226 Olfr1467-202ENSMUST00000215096 3671 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
ShhQ62226 AC158605.2-201ENSMUST00000220287 2726 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
ShhQ62226 2310003L06Rik-201ENSMUST00000007601 1603 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
ShhQ62226 1700097M23Rik-201ENSMUST00000204079 1522 ntBASIC3.82□□□□□ -1.8
ShhQ62226 Gm45352-201ENSMUST00000210140 1452 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
ShhQ62226 Gm17916-201ENSMUST00000186137 1342 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
ShhQ62226 Mir599-201ENSMUST00000102378 88 ntBASIC3.82□□□□□ -1.8
ShhQ62226 Gm25764-201ENSMUST00000104092 134 ntBASIC3.82□□□□□ -1.8
ShhQ62226 Gm23319-201ENSMUST00000104467 131 ntBASIC3.82□□□□□ -1.8
ShhQ62226 Gm12173-201ENSMUST00000117622 273 ntBASIC3.82□□□□□ -1.8
ShhQ62226 Gm13550-201ENSMUST00000118185 525 ntBASIC3.82□□□□□ -1.8
ShhQ62226 Gm12252-201ENSMUST00000119517 219 ntBASIC3.82□□□□□ -1.8
ShhQ62226 Gm16411-201ENSMUST00000122164 1100 ntBASIC3.82□□□□□ -1.8
ShhQ62226 Gm12368-201ENSMUST00000122251 434 ntBASIC3.82□□□□□ -1.8
ShhQ62226 Gm16064-201ENSMUST00000154997 464 ntTSL 2 BASIC3.82□□□□□ -1.8
ShhQ62226 Gm26036-201ENSMUST00000158149 144 ntBASIC3.82□□□□□ -1.8
ShhQ62226 Gm22836-201ENSMUST00000158441 61 ntBASIC3.82□□□□□ -1.8
ShhQ62226 Gm16043-201ENSMUST00000160030 616 ntTSL 3 BASIC3.82□□□□□ -1.8
ShhQ62226 Gm9613-201ENSMUST00000171662 196 ntBASIC3.82□□□□□ -1.8
ShhQ62226 Obox4-ps3-201ENSMUST00000183474 520 ntBASIC3.82□□□□□ -1.8
ShhQ62226 Gm27161-201ENSMUST00000183960 562 ntBASIC3.82□□□□□ -1.8
ShhQ62226 Gm29408-201ENSMUST00000187536 216 ntBASIC3.82□□□□□ -1.8
ShhQ62226 Gm5116-201ENSMUST00000187732 463 ntBASIC3.82□□□□□ -1.8
ShhQ62226 Gm29627-201ENSMUST00000187984 463 ntBASIC3.82□□□□□ -1.8
ShhQ62226 Gm37577-203ENSMUST00000194712 991 ntTSL 5 BASIC3.82□□□□□ -1.8
ShhQ62226 Mirlet7f-1-201ENSMUST00000198652 89 ntBASIC3.82□□□□□ -1.8
ShhQ62226 Gm44092-201ENSMUST00000204470 258 ntBASIC3.82□□□□□ -1.8
ShhQ62226 Klk1b18-ps-201ENSMUST00000205780 167 ntBASIC3.82□□□□□ -1.8
ShhQ62226 Gm44818-201ENSMUST00000206608 358 ntBASIC3.82□□□□□ -1.8
ShhQ62226 Gm34779-201ENSMUST00000210036 263 ntBASIC3.82□□□□□ -1.8
ShhQ62226 1700061N14Rik-201ENSMUST00000212295 463 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
ShhQ62226 AC161426.1-201ENSMUST00000214137 286 ntBASIC3.82□□□□□ -1.8
ShhQ62226 Gm9068-201ENSMUST00000217393 455 ntBASIC3.82□□□□□ -1.8
ShhQ62226 Gm18120-201ENSMUST00000220079 511 ntBASIC3.82□□□□□ -1.8
ShhQ62226 AC133076.1-201ENSMUST00000228074 484 ntBASIC3.82□□□□□ -1.8
ShhQ62226 1700084M14Rik-201ENSMUST00000078832 559 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
ShhQ62226 Tas2r110-201ENSMUST00000082014 1002 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
ShhQ62226 Gm26449-201ENSMUST00000082452 104 ntBASIC3.82□□□□□ -1.8
ShhQ62226 Snord14e-201ENSMUST00000082857 90 ntBASIC3.82□□□□□ -1.8
ShhQ62226 Gm22229-201ENSMUST00000082987 108 ntBASIC3.82□□□□□ -1.8
ShhQ62226 Gm26128-201ENSMUST00000083170 110 ntBASIC3.82□□□□□ -1.8
ShhQ62226 Mir215-201ENSMUST00000083628 112 ntBASIC3.82□□□□□ -1.8
ShhQ62226 Gm15292-201ENSMUST00000098895 385 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
ShhQ62226 Olfr1048-201ENSMUST00000099900 963 ntAPPRIS P2 BASIC3.82□□□□□ -1.8
ShhQ62226 Olfr1251-202ENSMUST00000214639 3071 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
ShhQ62226 Uty-205ENSMUST00000143286 5083 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
ShhQ62226 Zfp990-201ENSMUST00000105741 3044 ntAPPRIS P1 TSL 3 BASIC3.82□□□□□ -1.8
ShhQ62226 Olfr1249-202ENSMUST00000216124 3047 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
ShhQ62226 St8sia4-204ENSMUST00000189556 10027 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
ShhQ62226 Gm28168-201ENSMUST00000191265 2630 ntAPPRIS P1 TSL 5 BASIC3.82□□□□□ -1.8
ShhQ62226 Gm43658-201ENSMUST00000202348 4176 ntBASIC3.82□□□□□ -1.8
ShhQ62226 AC091683.1-201ENSMUST00000222307 2446 ntBASIC3.82□□□□□ -1.8
ShhQ62226 Slco6d1-202ENSMUST00000160796 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
ShhQ62226 Fam111a-201ENSMUST00000025595 3267 ntAPPRIS P3 TSL 1 (best) BASIC3.82□□□□□ -1.8
ShhQ62226 Oog2-201ENSMUST00000080405 1917 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
ShhQ62226 4931408C20Rik-201ENSMUST00000097801 4318 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
ShhQ62226 Has2-201ENSMUST00000050544 4237 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
ShhQ62226 Olfr330-202ENSMUST00000213188 2836 ntAPPRIS P1 TSL 2 BASIC3.81□□□□□ -1.8
ShhQ62226 Gm38010-201ENSMUST00000192592 2784 ntBASIC3.81□□□□□ -1.8
ShhQ62226 Olfr799-202ENSMUST00000213820 1627 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
ShhQ62226 Olfr1484-202ENSMUST00000208104 3621 ntTSL 2 BASIC3.81□□□□□ -1.8
ShhQ62226 Olfr1484-206ENSMUST00000217451 3628 ntAPPRIS P1 TSL 5 BASIC3.81□□□□□ -1.8
ShhQ62226 Ifi203-203ENSMUST00000123708 3482 ntAPPRIS P3 TSL 1 (best) BASIC3.81□□□□□ -1.8
ShhQ62226 Ms4a2-204ENSMUST00000186978 2391 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
ShhQ62226 Gm45792-201ENSMUST00000207795 4268 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
ShhQ62226 Cfh-203ENSMUST00000111977 4100 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
ShhQ62226 Gm44689-201ENSMUST00000208786 1372 ntTSL 5 BASIC3.81□□□□□ -1.8
ShhQ62226 Gm37747-201ENSMUST00000193717 4003 ntBASIC3.81□□□□□ -1.8
ShhQ62226 Vmn1r42-202ENSMUST00000226436 4045 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
ShhQ62226 Mir450-2-201ENSMUST00000102444 69 ntBASIC3.81□□□□□ -1.8
ShhQ62226 Ighv1-34-201ENSMUST00000103512 388 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
ShhQ62226 Vmn1r2-201ENSMUST00000105160 921 ntAPPRIS P1 BASIC3.81□□□□□ -1.8
ShhQ62226 Gm14392-201ENSMUST00000120332 401 ntBASIC3.81□□□□□ -1.8
ShhQ62226 Sult2a-ps4-201ENSMUST00000121421 386 ntBASIC3.81□□□□□ -1.8
ShhQ62226 Gm9225-201ENSMUST00000121921 836 ntBASIC3.81□□□□□ -1.8
ShhQ62226 Gm22453-201ENSMUST00000122801 318 ntBASIC3.81□□□□□ -1.8
Retrieved 100 of 76,532 protein–RNA pairs in 74.3 ms