Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm2389-201ENSMUST00000160487 189 ntBASIC4.92□□□□□ -1.62
Ddb1Q3U1J4 Ear10-202ENSMUST00000163652 471 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
Ddb1Q3U1J4 Gm26141-201ENSMUST00000175299 126 ntBASIC4.92□□□□□ -1.62
Ddb1Q3U1J4 Mir3112-201ENSMUST00000175431 82 ntBASIC4.92□□□□□ -1.62
Ddb1Q3U1J4 Gm22584-201ENSMUST00000177935 92 ntBASIC4.92□□□□□ -1.62
Ddb1Q3U1J4 Gm21518-201ENSMUST00000178115 567 ntTSL 5 BASIC4.92□□□□□ -1.62
Ddb1Q3U1J4 Gm20736-201ENSMUST00000178198 567 ntTSL 5 BASIC4.92□□□□□ -1.62
Ddb1Q3U1J4 Gm20843-201ENSMUST00000178505 567 ntTSL 5 BASIC4.92□□□□□ -1.62
Ddb1Q3U1J4 Gm21209-201ENSMUST00000178556 567 ntTSL 5 BASIC4.92□□□□□ -1.62
Ddb1Q3U1J4 Gm21258-201ENSMUST00000178673 567 ntTSL 5 BASIC4.92□□□□□ -1.62
Ddb1Q3U1J4 Gm21650-201ENSMUST00000179073 567 ntTSL 5 BASIC4.92□□□□□ -1.62
Ddb1Q3U1J4 Gm20937-201ENSMUST00000180329 567 ntTSL 5 BASIC4.92□□□□□ -1.62
Ddb1Q3U1J4 Gm29647-201ENSMUST00000188795 666 ntBASIC4.92□□□□□ -1.62
Ddb1Q3U1J4 1700024B18Rik-201ENSMUST00000190088 423 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
Ddb1Q3U1J4 Gm28504-201ENSMUST00000190977 666 ntBASIC4.92□□□□□ -1.62
Ddb1Q3U1J4 Gm35843-201ENSMUST00000193716 666 ntBASIC4.92□□□□□ -1.62
Ddb1Q3U1J4 Gm34015-201ENSMUST00000194908 451 ntBASIC4.92□□□□□ -1.62
Ddb1Q3U1J4 Gm29809-201ENSMUST00000218423 493 ntBASIC4.92□□□□□ -1.62
Ddb1Q3U1J4 AC134468.1-201ENSMUST00000220869 299 ntTSL 5 BASIC4.92□□□□□ -1.62
Ddb1Q3U1J4 AC133176.1-201ENSMUST00000226668 219 ntBASIC4.92□□□□□ -1.62
Ddb1Q3U1J4 Vmn1r25-202ENSMUST00000228585 909 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
Ddb1Q3U1J4 Olfr340-201ENSMUST00000072854 939 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
Ddb1Q3U1J4 Olfr824-201ENSMUST00000074161 948 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
Ddb1Q3U1J4 Olfr823-201ENSMUST00000081469 948 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
Ddb1Q3U1J4 Gm14124-201ENSMUST00000109922 3018 ntAPPRIS P1 TSL 3 BASIC4.92□□□□□ -1.62
Ddb1Q3U1J4 Olfr1280-203ENSMUST00000219291 6883 ntAPPRIS P1 TSL 3 BASIC4.92□□□□□ -1.62
Ddb1Q3U1J4 Gm17067-201ENSMUST00000166837 3673 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
Ddb1Q3U1J4 Gm38073-201ENSMUST00000195141 3665 ntBASIC4.92□□□□□ -1.62
Ddb1Q3U1J4 Gm2004-201ENSMUST00000109049 1749 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
Ddb1Q3U1J4 Gm14419-202ENSMUST00000126358 1749 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
Ddb1Q3U1J4 Gm37461-201ENSMUST00000193929 3704 ntBASIC4.92□□□□□ -1.62
Ddb1Q3U1J4 Olfr934-202ENSMUST00000214324 2462 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 Cd180-201ENSMUST00000022124 2650 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 Csn3-203ENSMUST00000113271 1596 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 Ms4a2-204ENSMUST00000186978 2391 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 Ccr1-201ENSMUST00000026911 2833 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 Gm26273-201ENSMUST00000104180 131 ntBASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 Gm11408-201ENSMUST00000117889 519 ntBASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 Gm5060-201ENSMUST00000120072 599 ntBASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 Gm15177-201ENSMUST00000120491 577 ntBASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 Gm16005-201ENSMUST00000120515 269 ntBASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 Gm12368-201ENSMUST00000122251 434 ntBASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 Gm6969-201ENSMUST00000140065 342 ntBASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 Gm16101-201ENSMUST00000160695 430 ntBASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 Gm16490-201ENSMUST00000165299 351 ntBASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 Mir6541-201ENSMUST00000183649 110 ntBASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 Zfp-ps-201ENSMUST00000185025 478 ntBASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 Obox4-ps2-201ENSMUST00000185088 442 ntBASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 Gm28146-201ENSMUST00000185517 701 ntBASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 Gm28574-201ENSMUST00000185757 699 ntBASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 Gm29139-201ENSMUST00000185794 248 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 Gm28397-201ENSMUST00000187970 699 ntBASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 Gm29366-201ENSMUST00000190481 699 ntBASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 Gm38080-201ENSMUST00000194035 268 ntBASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 Gm5551-201ENSMUST00000199720 690 ntBASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 Gm44475-201ENSMUST00000204041 424 ntBASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 Gm44909-201ENSMUST00000208756 165 ntBASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 Gm8423-201ENSMUST00000211387 607 ntBASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 Olfr848-ps1-201ENSMUST00000212241 930 ntBASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 Gm3442-201ENSMUST00000216808 710 ntBASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 1700024I08Rik-203ENSMUST00000222372 754 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 Mucl1-201ENSMUST00000078842 621 ntAPPRIS ALT2 BASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 Rny3-201ENSMUST00000083011 102 ntBASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 Zfp980-201ENSMUST00000105738 4006 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 Vmn2r76-201ENSMUST00000165771 2562 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 Huwe1-202ENSMUST00000112622 14168 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 Vmn2r46-201ENSMUST00000171523 2430 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 Svet1-201ENSMUST00000209370 3940 ntBASIC4.91□□□□□ -1.62
Ddb1Q3U1J4 Gm38240-201ENSMUST00000195110 2487 ntBASIC4.9□□□□□ -1.62
Ddb1Q3U1J4 Olfr476-202ENSMUST00000217173 2539 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.62
Ddb1Q3U1J4 Olfr1297-202ENSMUST00000213398 6998 ntAPPRIS P1 TSL 2 BASIC4.9□□□□□ -1.62
Ddb1Q3U1J4 Gm44435-201ENSMUST00000204379 4119 ntBASIC4.9□□□□□ -1.62
Ddb1Q3U1J4 Igkv1-131-201ENSMUST00000103306 362 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
Ddb1Q3U1J4 Pbsn-202ENSMUST00000114041 697 ntTSL 2 BASIC4.9□□□□□ -1.63
Ddb1Q3U1J4 Gm6760-201ENSMUST00000114682 604 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
Ddb1Q3U1J4 Gm12268-201ENSMUST00000118398 442 ntBASIC4.9□□□□□ -1.63
Ddb1Q3U1J4 Gm14861-201ENSMUST00000119451 455 ntBASIC4.9□□□□□ -1.63
Ddb1Q3U1J4 Gm11512-201ENSMUST00000119669 663 ntBASIC4.9□□□□□ -1.63
Ddb1Q3U1J4 Gm7916-201ENSMUST00000120325 456 ntBASIC4.9□□□□□ -1.63
Ddb1Q3U1J4 Gm13339-201ENSMUST00000120651 510 ntBASIC4.9□□□□□ -1.63
Ddb1Q3U1J4 Gm15323-201ENSMUST00000156109 429 ntTSL 3 BASIC4.9□□□□□ -1.63
Ddb1Q3U1J4 Gm26373-201ENSMUST00000157833 103 ntBASIC4.9□□□□□ -1.63
Ddb1Q3U1J4 Gm8649-201ENSMUST00000181799 233 ntBASIC4.9□□□□□ -1.63
Ddb1Q3U1J4 Gm27313-201ENSMUST00000183500 142 ntBASIC4.9□□□□□ -1.63
Ddb1Q3U1J4 Gm20811-201ENSMUST00000190500 553 ntBASIC4.9□□□□□ -1.63
Ddb1Q3U1J4 Gm37081-201ENSMUST00000192034 196 ntBASIC4.9□□□□□ -1.63
Ddb1Q3U1J4 Gm18488-201ENSMUST00000215082 364 ntBASIC4.9□□□□□ -1.63
Ddb1Q3U1J4 Gm18703-201ENSMUST00000215318 333 ntBASIC4.9□□□□□ -1.63
Ddb1Q3U1J4 AC140451.2-202ENSMUST00000226156 574 ntBASIC4.9□□□□□ -1.63
Ddb1Q3U1J4 A230057D06Rik-203ENSMUST00000208953 3357 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
Ddb1Q3U1J4 Vmn2r38-201ENSMUST00000108554 3663 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
Ddb1Q3U1J4 Nap1l1-202ENSMUST00000171797 3926 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
Ddb1Q3U1J4 Nap1l1-204ENSMUST00000218828 3934 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
Ddb1Q3U1J4 Gm38260-201ENSMUST00000193573 3995 ntBASIC4.9□□□□□ -1.63
Ddb1Q3U1J4 Gm37674-201ENSMUST00000194177 1834 ntBASIC4.9□□□□□ -1.63
Ddb1Q3U1J4 Olfr613-202ENSMUST00000214173 3840 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
Ddb1Q3U1J4 AC147615.2-201ENSMUST00000219876 2154 ntBASIC4.89□□□□□ -1.63
Ddb1Q3U1J4 Vmn1r51-207ENSMUST00000227766 4218 ntAPPRIS P1 BASIC4.89□□□□□ -1.63
Ddb1Q3U1J4 Jmjd1c-206ENSMUST00000173689 8609 ntAPPRIS ALT2 TSL 2 BASIC4.89□□□□□ -1.63
Ddb1Q3U1J4 Olfr32-205ENSMUST00000215659 2998 ntAPPRIS P1 TSL 3 BASIC4.89□□□□□ -1.63
Retrieved 100 of 76,532 protein–RNA pairs in 79.4 ms