Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Olfr836-202ENSMUST00000212730 5045 ntAPPRIS ALT2 TSL 5 BASIC3.85□□□□□ -1.79
ShhQ62226 Olfr836-203ENSMUST00000215981 5046 ntAPPRIS ALT2 TSL 5 BASIC3.85□□□□□ -1.79
ShhQ62226 Ano5-201ENSMUST00000043944 7785 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
ShhQ62226 Gm37195-201ENSMUST00000192006 3018 ntBASIC3.85□□□□□ -1.79
ShhQ62226 Olfr1019-202ENSMUST00000213515 3031 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
ShhQ62226 Vmn1r81-203ENSMUST00000227973 14002 ntAPPRIS P2 BASIC3.85□□□□□ -1.79
ShhQ62226 Olfr1440-208ENSMUST00000217062 7484 ntAPPRIS P1 TSL 2 BASIC3.85□□□□□ -1.79
ShhQ62226 Zfp808-201ENSMUST00000099449 2571 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
ShhQ62226 Gm21750-201ENSMUST00000098874 1497 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
ShhQ62226 Olfr1465-202ENSMUST00000207340 1561 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
ShhQ62226 Akap4-201ENSMUST00000057101 2851 ntAPPRIS P4 TSL 1 (best) BASIC3.84□□□□□ -1.79
ShhQ62226 Pkhd1l1-203ENSMUST00000209244 12949 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.79
ShhQ62226 Sorbs2-203ENSMUST00000124544 3798 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
ShhQ62226 Ktn1-201ENSMUST00000022391 4484 ntAPPRIS P3 TSL 1 (best) BASIC3.84□□□□□ -1.79
ShhQ62226 Gm37862-201ENSMUST00000193079 2533 ntBASIC3.84□□□□□ -1.79
ShhQ62226 Agtr2-201ENSMUST00000089188 3283 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
ShhQ62226 Olfr1020-202ENSMUST00000215347 2640 ntAPPRIS P1 TSL 3 BASIC3.84□□□□□ -1.79
ShhQ62226 Lipo5-201ENSMUST00000156818 2003 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.79
ShhQ62226 Gm43320-201ENSMUST00000196047 2916 ntBASIC3.84□□□□□ -1.79
ShhQ62226 AC152162.1-201ENSMUST00000225910 2917 ntBASIC3.84□□□□□ -1.79
ShhQ62226 S100a5-202ENSMUST00000107329 431 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
ShhQ62226 Hnmt-202ENSMUST00000114497 994 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
ShhQ62226 Gm11432-201ENSMUST00000117334 231 ntBASIC3.84□□□□□ -1.79
ShhQ62226 Vmn1r-ps93-201ENSMUST00000117599 432 ntBASIC3.84□□□□□ -1.79
ShhQ62226 Gm12509-201ENSMUST00000118033 609 ntBASIC3.84□□□□□ -1.79
ShhQ62226 Gm14469-201ENSMUST00000118363 202 ntBASIC3.84□□□□□ -1.79
ShhQ62226 Gm14530-201ENSMUST00000122391 333 ntBASIC3.84□□□□□ -1.79
ShhQ62226 Gm16157-201ENSMUST00000124813 534 ntTSL 3 BASIC3.84□□□□□ -1.79
ShhQ62226 4930441J16Rik-201ENSMUST00000153743 516 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
ShhQ62226 Gm26276-201ENSMUST00000157099 109 ntBASIC3.84□□□□□ -1.79
ShhQ62226 Gm23312-201ENSMUST00000158774 102 ntBASIC3.84□□□□□ -1.79
ShhQ62226 Gm17109-201ENSMUST00000163985 358 ntBASIC3.84□□□□□ -1.79
ShhQ62226 Gm17538-201ENSMUST00000168236 327 ntBASIC3.84□□□□□ -1.79
ShhQ62226 Gm7094-201ENSMUST00000178379 366 ntBASIC3.84□□□□□ -1.79
ShhQ62226 Spin2g-201ENSMUST00000178425 687 ntBASIC3.84□□□□□ -1.79
ShhQ62226 Gm21758-201ENSMUST00000179336 819 ntBASIC3.84□□□□□ -1.79
ShhQ62226 Rpl23a-ps10-201ENSMUST00000185511 462 ntBASIC3.84□□□□□ -1.79
ShhQ62226 Gm6712-202ENSMUST00000186431 526 ntTSL 5 BASIC3.84□□□□□ -1.79
ShhQ62226 Gm28625-201ENSMUST00000188309 205 ntBASIC3.84□□□□□ -1.79
ShhQ62226 Gm29097-201ENSMUST00000190273 422 ntBASIC3.84□□□□□ -1.79
ShhQ62226 Gm28337-201ENSMUST00000190425 666 ntBASIC3.84□□□□□ -1.79
ShhQ62226 Ighv1-28-201ENSMUST00000192987 351 ntBASIC3.84□□□□□ -1.79
ShhQ62226 Gm31511-201ENSMUST00000193134 657 ntBASIC3.84□□□□□ -1.79
ShhQ62226 Gm28724-202ENSMUST00000194218 295 ntBASIC3.84□□□□□ -1.79
ShhQ62226 Gm43649-201ENSMUST00000196596 391 ntBASIC3.84□□□□□ -1.79
ShhQ62226 Gm43853-201ENSMUST00000197162 301 ntBASIC3.84□□□□□ -1.79
ShhQ62226 Gm44465-201ENSMUST00000199536 114 ntBASIC3.84□□□□□ -1.79
ShhQ62226 Gm32780-201ENSMUST00000201402 540 ntTSL 3 BASIC3.84□□□□□ -1.79
ShhQ62226 Gm44032-201ENSMUST00000204841 166 ntBASIC3.84□□□□□ -1.79
ShhQ62226 Gm45173-201ENSMUST00000206819 305 ntBASIC3.84□□□□□ -1.79
ShhQ62226 AC152415.1-201ENSMUST00000213320 440 ntBASIC3.84□□□□□ -1.79
ShhQ62226 AC154374.1-201ENSMUST00000215351 351 ntBASIC3.84□□□□□ -1.79
ShhQ62226 Gm9309-201ENSMUST00000223537 546 ntBASIC3.84□□□□□ -1.79
ShhQ62226 AC126275.2-201ENSMUST00000225224 253 ntBASIC3.84□□□□□ -1.79
ShhQ62226 CT010506.2-201ENSMUST00000225618 183 ntBASIC3.84□□□□□ -1.79
ShhQ62226 AC150560.2-201ENSMUST00000227208 171 ntBASIC3.84□□□□□ -1.79
ShhQ62226 Tas2r123-201ENSMUST00000071696 1002 ntAPPRIS P1 BASIC3.84□□□□□ -1.79
ShhQ62226 n-R5s50-201ENSMUST00000083168 111 ntBASIC3.84□□□□□ -1.79
ShhQ62226 1700010D01Rik-201ENSMUST00000096366 507 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
ShhQ62226 Gm37045-201ENSMUST00000192016 2463 ntBASIC3.84□□□□□ -1.8
ShhQ62226 Vmn2r48-201ENSMUST00000165611 2568 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.8
ShhQ62226 Ddi1-201ENSMUST00000051706 7114 ntAPPRIS P1 BASIC3.84□□□□□ -1.8
ShhQ62226 4921501E09Rik-201ENSMUST00000024121 3916 ntAPPRIS P1 BASIC3.84□□□□□ -1.8
ShhQ62226 Zfp595-203ENSMUST00000168892 4040 ntAPPRIS P2 TSL 1 (best) BASIC3.84□□□□□ -1.8
ShhQ62226 Gm12374-201ENSMUST00000147108 3299 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
ShhQ62226 5830444F18Rik-201ENSMUST00000194009 1992 ntBASIC3.83□□□□□ -1.8
ShhQ62226 Gm20619-201ENSMUST00000175814 2008 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
ShhQ62226 Gm43834-201ENSMUST00000197097 4830 ntBASIC3.83□□□□□ -1.8
ShhQ62226 Kctd12b-202ENSMUST00000112572 4851 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
ShhQ62226 Gm6205-202ENSMUST00000190001 2515 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
ShhQ62226 Gm29260-201ENSMUST00000186391 2759 ntTSL 3 BASIC3.83□□□□□ -1.8
ShhQ62226 Gm43923-201ENSMUST00000203992 2911 ntBASIC3.83□□□□□ -1.8
ShhQ62226 Vmn1r171-203ENSMUST00000226321 3067 ntAPPRIS ALT2 BASIC3.83□□□□□ -1.8
ShhQ62226 Olfr646-202ENSMUST00000214099 3778 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
ShhQ62226 Gm1968-201ENSMUST00000100016 348 ntAPPRIS P1 TSL 5 BASIC3.83□□□□□ -1.8
ShhQ62226 Mir690-201ENSMUST00000102110 109 ntBASIC3.83□□□□□ -1.8
ShhQ62226 Mir667-201ENSMUST00000102441 92 ntBASIC3.83□□□□□ -1.8
ShhQ62226 Apool-202ENSMUST00000113415 783 ntAPPRIS ALT2 TSL 5 BASIC3.83□□□□□ -1.8
ShhQ62226 Gm13803-201ENSMUST00000117547 489 ntBASIC3.83□□□□□ -1.8
ShhQ62226 Gm3788-201ENSMUST00000119949 136 ntBASIC3.83□□□□□ -1.8
ShhQ62226 Gm5060-201ENSMUST00000120072 599 ntBASIC3.83□□□□□ -1.8
ShhQ62226 Gm14867-201ENSMUST00000120156 866 ntBASIC3.83□□□□□ -1.8
ShhQ62226 Gm14129-201ENSMUST00000122436 291 ntBASIC3.83□□□□□ -1.8
ShhQ62226 Gm4724-203ENSMUST00000152941 1198 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
ShhQ62226 Gm25066-201ENSMUST00000158145 123 ntBASIC3.83□□□□□ -1.8
ShhQ62226 Gm17416-201ENSMUST00000163724 201 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
ShhQ62226 Mir3066-201ENSMUST00000175296 83 ntBASIC3.83□□□□□ -1.8
ShhQ62226 Gm27254-201ENSMUST00000183926 517 ntBASIC3.83□□□□□ -1.8
ShhQ62226 Gm28661-201ENSMUST00000188231 681 ntBASIC3.83□□□□□ -1.8
ShhQ62226 Gm28779-201ENSMUST00000189678 323 ntBASIC3.83□□□□□ -1.8
ShhQ62226 Gm28314-201ENSMUST00000191276 345 ntBASIC3.83□□□□□ -1.8
ShhQ62226 Gm38044-201ENSMUST00000192964 487 ntBASIC3.83□□□□□ -1.8
ShhQ62226 Gm36953-201ENSMUST00000195295 268 ntBASIC3.83□□□□□ -1.8
ShhQ62226 Gm34732-201ENSMUST00000195441 445 ntTSL 3 BASIC3.83□□□□□ -1.8
ShhQ62226 Gm37253-201ENSMUST00000195679 562 ntTSL 5 BASIC3.83□□□□□ -1.8
ShhQ62226 Igkv12-49-201ENSMUST00000197714 278 ntBASIC3.83□□□□□ -1.8
ShhQ62226 Gm35702-201ENSMUST00000198653 511 ntBASIC3.83□□□□□ -1.8
ShhQ62226 Igkv11-118-201ENSMUST00000199448 346 ntBASIC3.83□□□□□ -1.8
ShhQ62226 Gm8041-201ENSMUST00000199755 616 ntBASIC3.83□□□□□ -1.8
ShhQ62226 Dnajc5g-202ENSMUST00000201740 581 ntAPPRIS ALT2 TSL 3 BASIC3.83□□□□□ -1.8
Retrieved 100 of 76,532 protein–RNA pairs in 94.1 ms