Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Vmn1r195-202ENSMUST00000228711 3056 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
ShhQ62226 Rps24-201ENSMUST00000112384 468 ntAPPRIS ALT1 TSL 5 BASIC3.86□□□□□ -1.79
ShhQ62226 Rps24-ps3-201ENSMUST00000118723 402 ntBASIC3.86□□□□□ -1.79
ShhQ62226 Gm15195-201ENSMUST00000118775 263 ntBASIC3.86□□□□□ -1.79
ShhQ62226 Gm14566-201ENSMUST00000118915 321 ntBASIC3.86□□□□□ -1.79
ShhQ62226 Gm9043-201ENSMUST00000119677 314 ntBASIC3.86□□□□□ -1.79
ShhQ62226 Gm14159-201ENSMUST00000119832 451 ntBASIC3.86□□□□□ -1.79
ShhQ62226 Gm14240-201ENSMUST00000120353 546 ntBASIC3.86□□□□□ -1.79
ShhQ62226 Gm14926-201ENSMUST00000120650 508 ntBASIC3.86□□□□□ -1.79
ShhQ62226 Gm14916-201ENSMUST00000121904 204 ntBASIC3.86□□□□□ -1.79
ShhQ62226 Gm8200-201ENSMUST00000122390 222 ntBASIC3.86□□□□□ -1.79
ShhQ62226 Gm25294-201ENSMUST00000122791 104 ntBASIC3.86□□□□□ -1.79
ShhQ62226 1700123O12Rik-203ENSMUST00000145856 425 ntTSL 5 BASIC3.86□□□□□ -1.79
ShhQ62226 Gm14041-201ENSMUST00000150181 276 ntTSL 3 BASIC3.86□□□□□ -1.79
ShhQ62226 Gm24724-201ENSMUST00000158230 107 ntBASIC3.86□□□□□ -1.79
ShhQ62226 Gm24314-201ENSMUST00000158274 123 ntBASIC3.86□□□□□ -1.79
ShhQ62226 Gm23583-201ENSMUST00000158533 289 ntBASIC3.86□□□□□ -1.79
ShhQ62226 Vmn1r103-201ENSMUST00000163461 918 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
ShhQ62226 Vmn1r151-201ENSMUST00000166079 918 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
ShhQ62226 Gm22716-201ENSMUST00000177596 107 ntBASIC3.86□□□□□ -1.79
ShhQ62226 Mir6382-201ENSMUST00000184055 110 ntBASIC3.86□□□□□ -1.79
ShhQ62226 1700067G17Rik-201ENSMUST00000186180 603 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
ShhQ62226 Gm20832-201ENSMUST00000189076 665 ntBASIC3.86□□□□□ -1.79
ShhQ62226 4930420N18Rik-201ENSMUST00000191831 676 ntBASIC3.86□□□□□ -1.79
ShhQ62226 Gm37459-202ENSMUST00000195007 563 ntTSL 3 BASIC3.86□□□□□ -1.79
ShhQ62226 Gm30638-201ENSMUST00000195570 656 ntBASIC3.86□□□□□ -1.79
ShhQ62226 Gm36728-201ENSMUST00000195782 665 ntBASIC3.86□□□□□ -1.79
ShhQ62226 Gm3010-201ENSMUST00000198805 448 ntBASIC3.86□□□□□ -1.79
ShhQ62226 Gm17906-201ENSMUST00000202480 901 ntBASIC3.86□□□□□ -1.79
ShhQ62226 Olfr747-202ENSMUST00000205373 1132 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
ShhQ62226 Olfr673-ps1-201ENSMUST00000210859 411 ntBASIC3.86□□□□□ -1.79
ShhQ62226 1700026F02Rik-205ENSMUST00000212266 787 ntTSL 5 BASIC3.86□□□□□ -1.79
ShhQ62226 AL669916.5-201ENSMUST00000214874 361 ntBASIC3.86□□□□□ -1.79
ShhQ62226 Olfr962-ps1-201ENSMUST00000217332 442 ntBASIC3.86□□□□□ -1.79
ShhQ62226 AC149586.1-201ENSMUST00000222647 645 ntTSL 3 BASIC3.86□□□□□ -1.79
ShhQ62226 CT030135.1-201ENSMUST00000223760 570 ntBASIC3.86□□□□□ -1.79
ShhQ62226 CT573085.1-201ENSMUST00000224279 1197 ntBASIC3.86□□□□□ -1.79
ShhQ62226 AC154426.1-201ENSMUST00000225614 1132 ntBASIC3.86□□□□□ -1.79
ShhQ62226 AC122393.1-201ENSMUST00000226570 319 ntBASIC3.86□□□□□ -1.79
ShhQ62226 AC144819.1-201ENSMUST00000227015 620 ntBASIC3.86□□□□□ -1.79
ShhQ62226 Kap-201ENSMUST00000048032 707 ntAPPRIS P2 TSL 1 (best) BASIC3.86□□□□□ -1.79
ShhQ62226 Olfr824-201ENSMUST00000074161 948 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
ShhQ62226 Olfr502-201ENSMUST00000078933 1059 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
ShhQ62226 Olfr1450-201ENSMUST00000082006 978 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
ShhQ62226 Gm32061-201ENSMUST00000207232 3478 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
ShhQ62226 Gm26733-201ENSMUST00000180846 2046 ntTSL 5 BASIC3.86□□□□□ -1.79
ShhQ62226 9330158H04Rik-201ENSMUST00000101535 3174 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
ShhQ62226 Ecm2-201ENSMUST00000051504 3596 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
ShhQ62226 Tenm1-202ENSMUST00000115058 12837 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
ShhQ62226 Gm6757-201ENSMUST00000189810 1706 ntBASIC3.86□□□□□ -1.79
ShhQ62226 Chl1-201ENSMUST00000066905 7562 ntAPPRIS P2 TSL 1 (best) BASIC3.86□□□□□ -1.79
ShhQ62226 Gm4211-201ENSMUST00000181103 2220 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
ShhQ62226 Gm42717-201ENSMUST00000197309 3463 ntBASIC3.86□□□□□ -1.79
ShhQ62226 Olfr1286-202ENSMUST00000184954 3398 ntAPPRIS P1 TSL 3 BASIC3.85□□□□□ -1.79
ShhQ62226 Olfr959-202ENSMUST00000215194 4339 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
ShhQ62226 Olfr694-204ENSMUST00000216895 4853 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
ShhQ62226 Dnah7b-201ENSMUST00000069293 12314 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
ShhQ62226 Gm37345-201ENSMUST00000193062 3138 ntBASIC3.85□□□□□ -1.79
ShhQ62226 Gm8297-202ENSMUST00000171964 1759 ntAPPRIS P5 TSL 5 BASIC3.85□□□□□ -1.79
ShhQ62226 Gm24987-201ENSMUST00000104453 134 ntBASIC3.85□□□□□ -1.79
ShhQ62226 2210407C18Rik-202ENSMUST00000108821 998 ntAPPRIS P1 TSL 5 BASIC3.85□□□□□ -1.79
ShhQ62226 Ctps2-203ENSMUST00000112300 741 ntTSL 3 BASIC3.85□□□□□ -1.79
ShhQ62226 Gm14624-201ENSMUST00000117746 192 ntBASIC3.85□□□□□ -1.79
ShhQ62226 Gm14687-201ENSMUST00000120206 363 ntBASIC3.85□□□□□ -1.79
ShhQ62226 Gm11398-201ENSMUST00000120330 320 ntBASIC3.85□□□□□ -1.79
ShhQ62226 6030471H07Rik-201ENSMUST00000125884 492 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
ShhQ62226 Gm12694-201ENSMUST00000149367 748 ntTSL 3 BASIC3.85□□□□□ -1.79
ShhQ62226 1700013N06Rik-201ENSMUST00000156376 663 ntTSL 5 BASIC3.85□□□□□ -1.79
ShhQ62226 Gm22080-201ENSMUST00000157591 106 ntBASIC3.85□□□□□ -1.79
ShhQ62226 Gm25666-201ENSMUST00000157702 107 ntBASIC3.85□□□□□ -1.79
ShhQ62226 Gm20538-201ENSMUST00000166808 225 ntAPPRIS P1 TSL 3 BASIC3.85□□□□□ -1.79
ShhQ62226 Gm20773-201ENSMUST00000178940 681 ntBASIC3.85□□□□□ -1.79
ShhQ62226 Gm21028-201ENSMUST00000179470 123 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
ShhQ62226 Vmn2r-ps19-201ENSMUST00000179720 269 ntBASIC3.85□□□□□ -1.79
ShhQ62226 Gm20885-201ENSMUST00000190192 654 ntBASIC3.85□□□□□ -1.79
ShhQ62226 Gm29276-201ENSMUST00000190453 932 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
ShhQ62226 Gm29740-201ENSMUST00000193182 655 ntBASIC3.85□□□□□ -1.79
ShhQ62226 Gm36866-201ENSMUST00000193343 657 ntBASIC3.85□□□□□ -1.79
ShhQ62226 Gm36047-201ENSMUST00000193659 657 ntBASIC3.85□□□□□ -1.79
ShhQ62226 Gm20857-201ENSMUST00000194766 657 ntBASIC3.85□□□□□ -1.79
ShhQ62226 Gm20858-201ENSMUST00000195459 657 ntBASIC3.85□□□□□ -1.79
ShhQ62226 Gm42566-201ENSMUST00000197120 643 ntBASIC3.85□□□□□ -1.79
ShhQ62226 Gm43039-201ENSMUST00000202883 963 ntBASIC3.85□□□□□ -1.79
ShhQ62226 Gm30784-201ENSMUST00000204491 794 ntTSL 2 BASIC3.85□□□□□ -1.79
ShhQ62226 Gm44765-201ENSMUST00000206927 601 ntBASIC3.85□□□□□ -1.79
ShhQ62226 Gm45232-201ENSMUST00000207811 162 ntBASIC3.85□□□□□ -1.79
ShhQ62226 Gm30790-201ENSMUST00000208256 958 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
ShhQ62226 Gm46138-201ENSMUST00000215294 426 ntBASIC3.85□□□□□ -1.79
ShhQ62226 4930545L08Rik-201ENSMUST00000215688 566 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
ShhQ62226 Rpl26-ps6-201ENSMUST00000216693 434 ntBASIC3.85□□□□□ -1.79
ShhQ62226 Gm35865-201ENSMUST00000220180 287 ntTSL 3 BASIC3.85□□□□□ -1.79
ShhQ62226 AC155634.2-201ENSMUST00000222001 489 ntTSL 3 BASIC3.85□□□□□ -1.79
ShhQ62226 AC159621.1-201ENSMUST00000223249 163 ntBASIC3.85□□□□□ -1.79
ShhQ62226 4930455B14Rik-203ENSMUST00000223613 640 ntBASIC3.85□□□□□ -1.79
ShhQ62226 AC147633.1-201ENSMUST00000225134 259 ntBASIC3.85□□□□□ -1.79
ShhQ62226 AC133176.1-201ENSMUST00000226668 219 ntBASIC3.85□□□□□ -1.79
ShhQ62226 Olfr1176-201ENSMUST00000057439 949 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
ShhQ62226 Olfr186-201ENSMUST00000062380 1005 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
ShhQ62226 Olfr476-201ENSMUST00000077249 933 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
ShhQ62226 Ang6-201ENSMUST00000096869 444 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
Retrieved 100 of 76,532 protein–RNA pairs in 130.7 ms