Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cdc40Q9DC48 Gm37292-201ENSMUST00000192062 758 ntBASIC16.04■□□□□ 0.16
Cdc40Q9DC48 Gm30025-201ENSMUST00000218555 728 ntBASIC16.04■□□□□ 0.16
Cdc40Q9DC48 Grhpr-201ENSMUST00000045078 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cdc40Q9DC48 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cdc40Q9DC48 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cdc40Q9DC48 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cdc40Q9DC48 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Cdc40Q9DC48 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC16.04■□□□□ 0.16
Cdc40Q9DC48 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Cdc40Q9DC48 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC16.04■□□□□ 0.16
Cdc40Q9DC48 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cdc40Q9DC48 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cdc40Q9DC48 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cdc40Q9DC48 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Cdc40Q9DC48 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cdc40Q9DC48 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cdc40Q9DC48 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cdc40Q9DC48 Gm43702-201ENSMUST00000198772 2546 ntBASIC16.03■□□□□ 0.16
Cdc40Q9DC48 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cdc40Q9DC48 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cdc40Q9DC48 Gm43799-201ENSMUST00000201845 579 ntBASIC16.03■□□□□ 0.16
Cdc40Q9DC48 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cdc40Q9DC48 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Cdc40Q9DC48 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Cdc40Q9DC48 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Cdc40Q9DC48 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Cdc40Q9DC48 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Cdc40Q9DC48 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
Cdc40Q9DC48 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Cdc40Q9DC48 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Cdc40Q9DC48 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Cdc40Q9DC48 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Cdc40Q9DC48 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Cdc40Q9DC48 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Cdc40Q9DC48 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Cdc40Q9DC48 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Cdc40Q9DC48 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Cdc40Q9DC48 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Cdc40Q9DC48 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Cdc40Q9DC48 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Cdc40Q9DC48 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC16.02■□□□□ 0.15
Cdc40Q9DC48 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Cdc40Q9DC48 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Cdc40Q9DC48 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Cdc40Q9DC48 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Cdc40Q9DC48 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Cdc40Q9DC48 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Cdc40Q9DC48 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Cdc40Q9DC48 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Cdc40Q9DC48 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC16.01■□□□□ 0.15
Cdc40Q9DC48 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC16.01■□□□□ 0.15
Cdc40Q9DC48 Nsl1-203ENSMUST00000139340 837 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Cdc40Q9DC48 AC121577.1-201ENSMUST00000227302 707 ntBASIC16.01■□□□□ 0.15
Cdc40Q9DC48 AC130671.1-201ENSMUST00000227384 1237 ntBASIC16.01■□□□□ 0.15
Cdc40Q9DC48 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Cdc40Q9DC48 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
Cdc40Q9DC48 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Cdc40Q9DC48 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Cdc40Q9DC48 Apaf1-208ENSMUST00000162618 5151 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Cdc40Q9DC48 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Cdc40Q9DC48 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
Cdc40Q9DC48 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Cdc40Q9DC48 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Cdc40Q9DC48 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Cdc40Q9DC48 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Cdc40Q9DC48 Ltbp4-202ENSMUST00000108369 5377 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
Cdc40Q9DC48 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC16■□□□□ 0.15
Cdc40Q9DC48 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Cdc40Q9DC48 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC16■□□□□ 0.15
Cdc40Q9DC48 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Cdc40Q9DC48 Fmr1-201ENSMUST00000088546 4409 ntTSL 1 (best) BASIC16■□□□□ 0.15
Cdc40Q9DC48 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC16■□□□□ 0.15
Cdc40Q9DC48 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC16■□□□□ 0.15
Cdc40Q9DC48 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC16■□□□□ 0.15
Cdc40Q9DC48 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Cdc40Q9DC48 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Cdc40Q9DC48 Gm19439-201ENSMUST00000198195 2273 ntBASIC16■□□□□ 0.15
Cdc40Q9DC48 Gm11643-201ENSMUST00000119578 864 ntBASIC16■□□□□ 0.15
Cdc40Q9DC48 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Cdc40Q9DC48 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
Cdc40Q9DC48 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Cdc40Q9DC48 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Cdc40Q9DC48 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Cdc40Q9DC48 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Cdc40Q9DC48 Gm7712-202ENSMUST00000222331 1510 ntBASIC15.99■□□□□ 0.15
Cdc40Q9DC48 Arhgef7-205ENSMUST00000110909 4926 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Cdc40Q9DC48 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC15.99■□□□□ 0.15
Cdc40Q9DC48 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
Cdc40Q9DC48 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC15.99■□□□□ 0.15
Cdc40Q9DC48 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Cdc40Q9DC48 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Cdc40Q9DC48 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Cdc40Q9DC48 Gm6433-201ENSMUST00000118634 875 ntBASIC15.99■□□□□ 0.15
Cdc40Q9DC48 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
Cdc40Q9DC48 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
Cdc40Q9DC48 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
Cdc40Q9DC48 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC15.99■□□□□ 0.15
Cdc40Q9DC48 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC15.99■□□□□ 0.15
Cdc40Q9DC48 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 19.4 ms