Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Nfix-204ENSMUST00000109764 5476 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Brf1Q8CFK2 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
Brf1Q8CFK2 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Brf1Q8CFK2 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC20.83■□□□□ 0.93
Brf1Q8CFK2 Klhl33-201ENSMUST00000164415 1602 ntTSL 5 BASIC20.83■□□□□ 0.93
Brf1Q8CFK2 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
Brf1Q8CFK2 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
Brf1Q8CFK2 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Brf1Q8CFK2 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC20.83■□□□□ 0.93
Brf1Q8CFK2 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC20.83■□□□□ 0.93
Brf1Q8CFK2 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC20.83■□□□□ 0.93
Brf1Q8CFK2 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Brf1Q8CFK2 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Brf1Q8CFK2 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Brf1Q8CFK2 Mthfs-201ENSMUST00000085256 816 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Brf1Q8CFK2 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Brf1Q8CFK2 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Brf1Q8CFK2 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Brf1Q8CFK2 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Brf1Q8CFK2 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
Brf1Q8CFK2 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Brf1Q8CFK2 Lhx6-208ENSMUST00000148852 1481 ntTSL 5 BASIC20.82■□□□□ 0.92
Brf1Q8CFK2 Blmh-201ENSMUST00000021197 2497 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Brf1Q8CFK2 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Brf1Q8CFK2 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Brf1Q8CFK2 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
Brf1Q8CFK2 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Brf1Q8CFK2 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC20.82■□□□□ 0.92
Brf1Q8CFK2 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
Brf1Q8CFK2 Gm9484-201ENSMUST00000195892 1159 ntBASIC20.82■□□□□ 0.92
Brf1Q8CFK2 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC20.82■□□□□ 0.92
Brf1Q8CFK2 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Brf1Q8CFK2 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Brf1Q8CFK2 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Brf1Q8CFK2 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
Brf1Q8CFK2 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC20.82■□□□□ 0.92
Brf1Q8CFK2 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Brf1Q8CFK2 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Brf1Q8CFK2 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Brf1Q8CFK2 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Brf1Q8CFK2 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
Brf1Q8CFK2 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Brf1Q8CFK2 Aatk-203ENSMUST00000103020 5687 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
Brf1Q8CFK2 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Brf1Q8CFK2 Gm7638-201ENSMUST00000121348 967 ntBASIC20.81■□□□□ 0.92
Brf1Q8CFK2 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Brf1Q8CFK2 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC20.81■□□□□ 0.92
Brf1Q8CFK2 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC20.81■□□□□ 0.92
Brf1Q8CFK2 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Brf1Q8CFK2 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Brf1Q8CFK2 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Brf1Q8CFK2 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
Brf1Q8CFK2 Tmem8-201ENSMUST00000025010 3464 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Brf1Q8CFK2 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Brf1Q8CFK2 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Brf1Q8CFK2 Sharpin-201ENSMUST00000023211 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Brf1Q8CFK2 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Brf1Q8CFK2 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Brf1Q8CFK2 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Brf1Q8CFK2 2810408A11Rik-203ENSMUST00000102580 1640 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
Brf1Q8CFK2 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Brf1Q8CFK2 Gm37025-201ENSMUST00000195159 829 ntBASIC20.8■□□□□ 0.92
Brf1Q8CFK2 Tm7sf3-201ENSMUST00000037709 3241 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Brf1Q8CFK2 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Brf1Q8CFK2 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC20.8■□□□□ 0.92
Brf1Q8CFK2 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Brf1Q8CFK2 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Brf1Q8CFK2 Gm43294-201ENSMUST00000202850 2490 ntBASIC20.8■□□□□ 0.92
Brf1Q8CFK2 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Brf1Q8CFK2 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Brf1Q8CFK2 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC20.8■□□□□ 0.92
Brf1Q8CFK2 Rmdn3-201ENSMUST00000094695 2249 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Brf1Q8CFK2 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC20.79■□□□□ 0.92
Brf1Q8CFK2 Gm16499-203ENSMUST00000204633 2177 ntBASIC20.79■□□□□ 0.92
Brf1Q8CFK2 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Brf1Q8CFK2 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Brf1Q8CFK2 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Brf1Q8CFK2 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Brf1Q8CFK2 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Brf1Q8CFK2 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Brf1Q8CFK2 Gm37055-201ENSMUST00000191866 133 ntBASIC20.79■□□□□ 0.92
Brf1Q8CFK2 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
Brf1Q8CFK2 Gm10252-201ENSMUST00000209541 832 ntBASIC20.79■□□□□ 0.92
Brf1Q8CFK2 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Brf1Q8CFK2 Gm5417-201ENSMUST00000079706 384 ntBASIC20.79■□□□□ 0.92
Brf1Q8CFK2 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
Brf1Q8CFK2 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Brf1Q8CFK2 Krt12-201ENSMUST00000017741 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Brf1Q8CFK2 Zkscan14-201ENSMUST00000031632 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Brf1Q8CFK2 Gm10461-201ENSMUST00000202073 4786 ntBASIC20.79■□□□□ 0.92
Brf1Q8CFK2 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
Brf1Q8CFK2 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
Brf1Q8CFK2 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Brf1Q8CFK2 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Brf1Q8CFK2 Gm43338-201ENSMUST00000198617 2223 ntBASIC20.78■□□□□ 0.92
Brf1Q8CFK2 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
Brf1Q8CFK2 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
Brf1Q8CFK2 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Brf1Q8CFK2 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Brf1Q8CFK2 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Retrieved 100 of 76,532 protein–RNA pairs in 43.8 ms