Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Gm4913-201ENSMUST00000117075 1290 ntBASIC14.36□□□□□ -0.11
Col7a1Q63870 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Col7a1Q63870 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col7a1Q63870 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
Col7a1Q63870 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC14.36□□□□□ -0.11
Col7a1Q63870 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC14.36□□□□□ -0.11
Col7a1Q63870 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Col7a1Q63870 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Col7a1Q63870 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col7a1Q63870 Gm15500-202ENSMUST00000071641 1019 ntBASIC14.36□□□□□ -0.11
Col7a1Q63870 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Col7a1Q63870 Olfr1232-201ENSMUST00000099785 936 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Col7a1Q63870 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col7a1Q63870 Jdp2-202ENSMUST00000171754 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col7a1Q63870 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Col7a1Q63870 Naa10-206ENSMUST00000114391 834 ntTSL 5 BASIC14.36□□□□□ -0.11
Col7a1Q63870 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col7a1Q63870 Nudt16l1-201ENSMUST00000050881 1269 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col7a1Q63870 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col7a1Q63870 9030624G23Rik-201ENSMUST00000101538 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col7a1Q63870 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Col7a1Q63870 Cog6-204ENSMUST00000193432 2078 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Col7a1Q63870 Anapc15-204ENSMUST00000106973 650 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
Col7a1Q63870 Tctn3-202ENSMUST00000132452 1271 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col7a1Q63870 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC14.35□□□□□ -0.11
Col7a1Q63870 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC14.35□□□□□ -0.11
Col7a1Q63870 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col7a1Q63870 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col7a1Q63870 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC14.35□□□□□ -0.11
Col7a1Q63870 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col7a1Q63870 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Col7a1Q63870 Gm13418-201ENSMUST00000119097 944 ntBASIC14.35□□□□□ -0.11
Col7a1Q63870 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC14.35□□□□□ -0.11
Col7a1Q63870 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col7a1Q63870 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Col7a1Q63870 1110035H17Rik-202ENSMUST00000205672 1231 ntBASIC14.35□□□□□ -0.11
Col7a1Q63870 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col7a1Q63870 L3hypdh-201ENSMUST00000019862 1831 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col7a1Q63870 Gm15862-201ENSMUST00000146349 361 ntTSL 2 BASIC14.35□□□□□ -0.11
Col7a1Q63870 AC124549.3-201ENSMUST00000225541 367 ntBASIC14.35□□□□□ -0.11
Col7a1Q63870 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col7a1Q63870 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Col7a1Q63870 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Col7a1Q63870 AC121961.1-201ENSMUST00000218594 1779 ntBASIC14.34□□□□□ -0.11
Col7a1Q63870 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col7a1Q63870 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Col7a1Q63870 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col7a1Q63870 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col7a1Q63870 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col7a1Q63870 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col7a1Q63870 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC14.34□□□□□ -0.11
Col7a1Q63870 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC14.34□□□□□ -0.11
Col7a1Q63870 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col7a1Q63870 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col7a1Q63870 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col7a1Q63870 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Col7a1Q63870 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col7a1Q63870 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Col7a1Q63870 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC14.34□□□□□ -0.11
Col7a1Q63870 Gm11780-201ENSMUST00000136880 516 ntBASIC14.34□□□□□ -0.11
Col7a1Q63870 Gm31105-201ENSMUST00000211421 687 ntTSL 2 BASIC14.34□□□□□ -0.11
Col7a1Q63870 Tmem51-201ENSMUST00000036572 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Col7a1Q63870 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC14.33□□□□□ -0.11
Col7a1Q63870 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC14.33□□□□□ -0.11
Col7a1Q63870 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Col7a1Q63870 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
Col7a1Q63870 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col7a1Q63870 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col7a1Q63870 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC14.33□□□□□ -0.12
Col7a1Q63870 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col7a1Q63870 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Col7a1Q63870 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col7a1Q63870 Gm38308-201ENSMUST00000194934 1809 ntBASIC14.33□□□□□ -0.12
Col7a1Q63870 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col7a1Q63870 Gm11424-201ENSMUST00000121929 829 ntBASIC14.33□□□□□ -0.12
Col7a1Q63870 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col7a1Q63870 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
Col7a1Q63870 Ciao1-204ENSMUST00000174030 1109 ntTSL 5 BASIC14.33□□□□□ -0.12
Col7a1Q63870 Mir8117-201ENSMUST00000184773 107 ntBASIC14.33□□□□□ -0.12
Col7a1Q63870 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC14.33□□□□□ -0.12
Col7a1Q63870 AV026068-213ENSMUST00000223675 1171 ntBASIC14.33□□□□□ -0.12
Col7a1Q63870 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col7a1Q63870 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col7a1Q63870 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Col7a1Q63870 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col7a1Q63870 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col7a1Q63870 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col7a1Q63870 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col7a1Q63870 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Col7a1Q63870 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Col7a1Q63870 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col7a1Q63870 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Col7a1Q63870 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col7a1Q63870 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col7a1Q63870 Crym-201ENSMUST00000033198 1383 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Col7a1Q63870 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC14.32□□□□□ -0.12
Col7a1Q63870 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Col7a1Q63870 Gm20949-201ENSMUST00000206478 952 ntBASIC14.32□□□□□ -0.12
Col7a1Q63870 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Col7a1Q63870 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 31.8 ms