Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 CT943659.1-201ENSMUST00000215459 326 ntBASIC16.73■□□□□ 0.27
Col27a1Q5QNQ9 Npcd-201ENSMUST00000023060 1162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col27a1Q5QNQ9 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col27a1Q5QNQ9 Mrpl17-201ENSMUST00000033170 1028 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
Col27a1Q5QNQ9 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col27a1Q5QNQ9 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Col27a1Q5QNQ9 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Col27a1Q5QNQ9 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC16.72■□□□□ 0.27
Col27a1Q5QNQ9 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col27a1Q5QNQ9 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC16.72■□□□□ 0.27
Col27a1Q5QNQ9 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col27a1Q5QNQ9 Ogfod3-201ENSMUST00000026169 1308 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col27a1Q5QNQ9 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col27a1Q5QNQ9 Secisbp2-202ENSMUST00000110044 1915 ntTSL 2 BASIC16.72■□□□□ 0.27
Col27a1Q5QNQ9 Gm14140-201ENSMUST00000119999 995 ntBASIC16.72■□□□□ 0.27
Col27a1Q5QNQ9 Hint3-203ENSMUST00000161074 875 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col27a1Q5QNQ9 Gm24513-201ENSMUST00000174964 138 ntBASIC16.72■□□□□ 0.27
Col27a1Q5QNQ9 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
Col27a1Q5QNQ9 Gm10175-201ENSMUST00000086013 645 ntBASIC16.72■□□□□ 0.27
Col27a1Q5QNQ9 Acads-201ENSMUST00000031524 1870 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col27a1Q5QNQ9 Hpcal1-201ENSMUST00000071858 1526 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Col27a1Q5QNQ9 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col27a1Q5QNQ9 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Col27a1Q5QNQ9 Gm28050-201ENSMUST00000124394 449 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Col27a1Q5QNQ9 H2-Bl-201ENSMUST00000173080 1138 ntAPPRIS P5 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col27a1Q5QNQ9 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Col27a1Q5QNQ9 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC16.71■□□□□ 0.27
Col27a1Q5QNQ9 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC16.71■□□□□ 0.27
Col27a1Q5QNQ9 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC16.71■□□□□ 0.27
Col27a1Q5QNQ9 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col27a1Q5QNQ9 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Col27a1Q5QNQ9 Platr31-201ENSMUST00000180653 1466 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Col27a1Q5QNQ9 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
Col27a1Q5QNQ9 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col27a1Q5QNQ9 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Col27a1Q5QNQ9 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Col27a1Q5QNQ9 Nucb2-201ENSMUST00000032895 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col27a1Q5QNQ9 Idnk-204ENSMUST00000226010 1898 ntBASIC16.7■□□□□ 0.26
Col27a1Q5QNQ9 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col27a1Q5QNQ9 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col27a1Q5QNQ9 Ercc6l2-202ENSMUST00000021926 1592 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Col27a1Q5QNQ9 Notumos-201ENSMUST00000151998 2659 ntBASIC16.7■□□□□ 0.26
Col27a1Q5QNQ9 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Col27a1Q5QNQ9 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col27a1Q5QNQ9 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC16.7■□□□□ 0.26
Col27a1Q5QNQ9 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
Col27a1Q5QNQ9 Bloc1s5-203ENSMUST00000224902 612 ntBASIC16.7■□□□□ 0.26
Col27a1Q5QNQ9 Apopt1-201ENSMUST00000040519 1065 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col27a1Q5QNQ9 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col27a1Q5QNQ9 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Col27a1Q5QNQ9 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col27a1Q5QNQ9 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col27a1Q5QNQ9 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Col27a1Q5QNQ9 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Col27a1Q5QNQ9 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Col27a1Q5QNQ9 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC16.69■□□□□ 0.26
Col27a1Q5QNQ9 Gm43935-201ENSMUST00000203569 1050 ntBASIC16.69■□□□□ 0.26
Col27a1Q5QNQ9 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC16.69■□□□□ 0.26
Col27a1Q5QNQ9 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC16.69■□□□□ 0.26
Col27a1Q5QNQ9 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC16.69■□□□□ 0.26
Col27a1Q5QNQ9 BC021767-201ENSMUST00000126387 1716 ntBASIC16.69■□□□□ 0.26
Col27a1Q5QNQ9 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Col27a1Q5QNQ9 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC16.69■□□□□ 0.26
Col27a1Q5QNQ9 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC16.68■□□□□ 0.26
Col27a1Q5QNQ9 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC16.68■□□□□ 0.26
Col27a1Q5QNQ9 AC225888.1-201ENSMUST00000227184 728 ntBASIC16.68■□□□□ 0.26
Col27a1Q5QNQ9 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col27a1Q5QNQ9 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC16.68■□□□□ 0.26
Col27a1Q5QNQ9 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Col27a1Q5QNQ9 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col27a1Q5QNQ9 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col27a1Q5QNQ9 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col27a1Q5QNQ9 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col27a1Q5QNQ9 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Col27a1Q5QNQ9 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col27a1Q5QNQ9 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC16.68■□□□□ 0.26
Col27a1Q5QNQ9 Fbxo17-205ENSMUST00000167118 861 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Col27a1Q5QNQ9 Gm27397-201ENSMUST00000184997 107 ntBASIC16.68■□□□□ 0.26
Col27a1Q5QNQ9 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC16.68■□□□□ 0.26
Col27a1Q5QNQ9 Gm43272-201ENSMUST00000200599 1584 ntBASIC16.67■□□□□ 0.26
Col27a1Q5QNQ9 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC16.67■□□□□ 0.26
Col27a1Q5QNQ9 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Col27a1Q5QNQ9 B9d2-201ENSMUST00000108403 1021 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col27a1Q5QNQ9 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
Col27a1Q5QNQ9 Tsfm-207ENSMUST00000152054 655 ntTSL 3 BASIC16.67■□□□□ 0.26
Col27a1Q5QNQ9 Abhd18-206ENSMUST00000203650 797 ntTSL 5 BASIC16.67■□□□□ 0.26
Col27a1Q5QNQ9 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC16.67■□□□□ 0.26
Col27a1Q5QNQ9 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Col27a1Q5QNQ9 Rad51d-203ENSMUST00000092844 1228 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Col27a1Q5QNQ9 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col27a1Q5QNQ9 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC16.67■□□□□ 0.26
Col27a1Q5QNQ9 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Col27a1Q5QNQ9 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Col27a1Q5QNQ9 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC16.67■□□□□ 0.26
Col27a1Q5QNQ9 Irf5-205ENSMUST00000167252 1693 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col27a1Q5QNQ9 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Col27a1Q5QNQ9 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col27a1Q5QNQ9 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Col27a1Q5QNQ9 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col27a1Q5QNQ9 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 23.2 ms