Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Gm9803-201ENSMUST00000057649 563 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
Limch1Q3UH68 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
Limch1Q3UH68 Proc-201ENSMUST00000171765 1566 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
Limch1Q3UH68 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.84
Limch1Q3UH68 Gm15635-204ENSMUST00000208024 2539 ntBASIC20.32■□□□□ 0.84
Limch1Q3UH68 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Limch1Q3UH68 Tmem131-201ENSMUST00000027290 6546 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Limch1Q3UH68 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Limch1Q3UH68 AC121598.2-201ENSMUST00000228376 2325 ntBASIC20.32■□□□□ 0.84
Limch1Q3UH68 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Limch1Q3UH68 Plppr2-201ENSMUST00000046371 2626 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Limch1Q3UH68 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Limch1Q3UH68 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Limch1Q3UH68 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Limch1Q3UH68 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Limch1Q3UH68 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC20.32■□□□□ 0.84
Limch1Q3UH68 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC20.32■□□□□ 0.84
Limch1Q3UH68 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC20.32■□□□□ 0.84
Limch1Q3UH68 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Limch1Q3UH68 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Limch1Q3UH68 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Limch1Q3UH68 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Limch1Q3UH68 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
Limch1Q3UH68 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Limch1Q3UH68 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Limch1Q3UH68 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Limch1Q3UH68 Osgin2-201ENSMUST00000037198 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Limch1Q3UH68 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Limch1Q3UH68 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
Limch1Q3UH68 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Limch1Q3UH68 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Limch1Q3UH68 4933406B15Rik-201ENSMUST00000220065 1182 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Limch1Q3UH68 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Limch1Q3UH68 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Limch1Q3UH68 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Limch1Q3UH68 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Limch1Q3UH68 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Limch1Q3UH68 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Limch1Q3UH68 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Limch1Q3UH68 Tmco4-202ENSMUST00000050949 3318 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Limch1Q3UH68 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Limch1Q3UH68 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Limch1Q3UH68 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Limch1Q3UH68 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Limch1Q3UH68 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Limch1Q3UH68 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Limch1Q3UH68 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Limch1Q3UH68 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Limch1Q3UH68 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Limch1Q3UH68 Nrxn1-217ENSMUST00000174337 3021 ntTSL 5 BASIC20.3■□□□□ 0.84
Limch1Q3UH68 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC20.3■□□□□ 0.84
Limch1Q3UH68 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Limch1Q3UH68 Mmp28-201ENSMUST00000021020 2311 ntAPPRIS P4 TSL 1 (best) BASIC20.3■□□□□ 0.84
Limch1Q3UH68 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Limch1Q3UH68 Gm43338-201ENSMUST00000198617 2223 ntBASIC20.29■□□□□ 0.84
Limch1Q3UH68 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
Limch1Q3UH68 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC20.29■□□□□ 0.84
Limch1Q3UH68 Gm10231-201ENSMUST00000181584 441 ntBASIC20.29■□□□□ 0.84
Limch1Q3UH68 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Limch1Q3UH68 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC20.29■□□□□ 0.84
Limch1Q3UH68 Gm21814-202ENSMUST00000203277 873 ntBASIC20.29■□□□□ 0.84
Limch1Q3UH68 Gm10175-202ENSMUST00000208752 441 ntBASIC20.29■□□□□ 0.84
Limch1Q3UH68 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Limch1Q3UH68 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Limch1Q3UH68 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Limch1Q3UH68 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Limch1Q3UH68 Tekt1-203ENSMUST00000108503 1397 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Limch1Q3UH68 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Limch1Q3UH68 Gm43294-201ENSMUST00000202850 2490 ntBASIC20.29■□□□□ 0.84
Limch1Q3UH68 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Limch1Q3UH68 Glrx2-210ENSMUST00000185362 3337 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
Limch1Q3UH68 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Limch1Q3UH68 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Limch1Q3UH68 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
Limch1Q3UH68 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Limch1Q3UH68 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Limch1Q3UH68 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Limch1Q3UH68 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Limch1Q3UH68 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Limch1Q3UH68 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC20.28■□□□□ 0.84
Limch1Q3UH68 Gm18025-201ENSMUST00000221733 862 ntBASIC20.28■□□□□ 0.84
Limch1Q3UH68 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
Limch1Q3UH68 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Limch1Q3UH68 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Limch1Q3UH68 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Limch1Q3UH68 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Limch1Q3UH68 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC20.28■□□□□ 0.84
Limch1Q3UH68 9330160F10Rik-201ENSMUST00000101007 2766 ntBASIC20.28■□□□□ 0.84
Limch1Q3UH68 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
Limch1Q3UH68 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Limch1Q3UH68 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Limch1Q3UH68 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC20.27■□□□□ 0.84
Limch1Q3UH68 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Limch1Q3UH68 AC124581.1-201ENSMUST00000225416 1399 ntBASIC20.27■□□□□ 0.84
Limch1Q3UH68 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC20.27■□□□□ 0.84
Limch1Q3UH68 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Limch1Q3UH68 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Limch1Q3UH68 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
Limch1Q3UH68 Tle4-201ENSMUST00000052011 4555 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.84
Limch1Q3UH68 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms