Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Col9a1Q05722 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
Col9a1Q05722 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col9a1Q05722 Uck1-201ENSMUST00000002625 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col9a1Q05722 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col9a1Q05722 Wnt10b-207ENSMUST00000228594 1510 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
Col9a1Q05722 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col9a1Q05722 Ubl5-204ENSMUST00000160682 489 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Col9a1Q05722 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Col9a1Q05722 Rpl31-205ENSMUST00000194746 703 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Col9a1Q05722 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Col9a1Q05722 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC16.93■□□□□ 0.3
Col9a1Q05722 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col9a1Q05722 AC120002.2-201ENSMUST00000220205 773 ntBASIC16.93■□□□□ 0.3
Col9a1Q05722 Gm5626-201ENSMUST00000222151 1058 ntBASIC16.93■□□□□ 0.3
Col9a1Q05722 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col9a1Q05722 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Col9a1Q05722 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Col9a1Q05722 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col9a1Q05722 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Col9a1Q05722 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col9a1Q05722 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col9a1Q05722 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Col9a1Q05722 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col9a1Q05722 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Col9a1Q05722 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col9a1Q05722 Runx2-207ENSMUST00000160673 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col9a1Q05722 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col9a1Q05722 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Col9a1Q05722 Shd-201ENSMUST00000044216 1546 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col9a1Q05722 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col9a1Q05722 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Col9a1Q05722 Meig1-204ENSMUST00000115083 567 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
Col9a1Q05722 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC16.92■□□□□ 0.3
Col9a1Q05722 Gm17114-201ENSMUST00000164716 511 ntTSL 3 BASIC16.92■□□□□ 0.3
Col9a1Q05722 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
Col9a1Q05722 AV026068-213ENSMUST00000223675 1171 ntBASIC16.92■□□□□ 0.3
Col9a1Q05722 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col9a1Q05722 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col9a1Q05722 Gm8396-201ENSMUST00000057361 823 ntBASIC16.92■□□□□ 0.3
Col9a1Q05722 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Col9a1Q05722 D1Ertd622e-203ENSMUST00000149927 2703 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col9a1Q05722 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Col9a1Q05722 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col9a1Q05722 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col9a1Q05722 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col9a1Q05722 Mtx1-201ENSMUST00000073572 1617 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Col9a1Q05722 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col9a1Q05722 Dguok-202ENSMUST00000113888 1007 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Col9a1Q05722 Gm13616-201ENSMUST00000120600 222 ntBASIC16.91■□□□□ 0.3
Col9a1Q05722 Dguok-201ENSMUST00000014698 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col9a1Q05722 Rhox2a-202ENSMUST00000173650 735 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Col9a1Q05722 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Col9a1Q05722 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col9a1Q05722 Rhox2c-204ENSMUST00000184688 720 ntTSL 5 BASIC16.91■□□□□ 0.3
Col9a1Q05722 Gm21057-201ENSMUST00000206022 670 ntTSL 3 BASIC16.91■□□□□ 0.3
Col9a1Q05722 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col9a1Q05722 B4galt6-201ENSMUST00000070080 5808 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col9a1Q05722 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col9a1Q05722 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Col9a1Q05722 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Col9a1Q05722 Acot7-206ENSMUST00000167926 1505 ntAPPRIS P4 TSL 1 (best) BASIC16.91■□□□□ 0.3
Col9a1Q05722 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Col9a1Q05722 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Col9a1Q05722 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col9a1Q05722 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC16.9■□□□□ 0.3
Col9a1Q05722 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col9a1Q05722 H2af-ps-201ENSMUST00000119066 295 ntBASIC16.9■□□□□ 0.3
Col9a1Q05722 Lamtor5-201ENSMUST00000145735 881 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Col9a1Q05722 Ino80e-214ENSMUST00000206349 883 ntTSL 2 BASIC16.9■□□□□ 0.3
Col9a1Q05722 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col9a1Q05722 Rhox7a-201ENSMUST00000096454 983 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Col9a1Q05722 Gm18688-201ENSMUST00000204695 1859 ntBASIC16.9■□□□□ 0.3
Col9a1Q05722 H1fnt-201ENSMUST00000060855 1326 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Col9a1Q05722 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Col9a1Q05722 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Col9a1Q05722 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.3
Col9a1Q05722 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.3
Col9a1Q05722 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col9a1Q05722 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col9a1Q05722 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col9a1Q05722 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
Col9a1Q05722 Arrdc1-201ENSMUST00000028349 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col9a1Q05722 Hist1h2ae-201ENSMUST00000102969 704 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
Col9a1Q05722 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
Col9a1Q05722 9430038I01Rik-202ENSMUST00000117404 699 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
Col9a1Q05722 Rab11fip4os2-201ENSMUST00000123067 689 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Col9a1Q05722 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC16.89■□□□□ 0.29
Col9a1Q05722 Gm36972-201ENSMUST00000194000 676 ntTSL 3 BASIC16.89■□□□□ 0.29
Col9a1Q05722 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Col9a1Q05722 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Col9a1Q05722 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Col9a1Q05722 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col9a1Q05722 Cav3-201ENSMUST00000075477 1157 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col9a1Q05722 Hist1h2ah-201ENSMUST00000091742 405 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
Col9a1Q05722 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
Col9a1Q05722 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Col9a1Q05722 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Col9a1Q05722 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Col9a1Q05722 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 18.3 ms