Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Shmt1P50431 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Shmt1P50431 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Shmt1P50431 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Shmt1P50431 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Shmt1P50431 Ing4-205ENSMUST00000140131 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Shmt1P50431 Dleu2-208ENSMUST00000182768 1442 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Shmt1P50431 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Shmt1P50431 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Shmt1P50431 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Shmt1P50431 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
Shmt1P50431 Gm28876-201ENSMUST00000188137 703 ntTSL 3 BASIC18.25■□□□□ 0.51
Shmt1P50431 AC120002.2-201ENSMUST00000220205 773 ntBASIC18.25■□□□□ 0.51
Shmt1P50431 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Shmt1P50431 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Shmt1P50431 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Shmt1P50431 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC18.25■□□□□ 0.51
Shmt1P50431 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Shmt1P50431 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Shmt1P50431 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Shmt1P50431 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Shmt1P50431 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
Shmt1P50431 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Shmt1P50431 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Shmt1P50431 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Shmt1P50431 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Shmt1P50431 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Shmt1P50431 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Shmt1P50431 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC18.24■□□□□ 0.51
Shmt1P50431 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Shmt1P50431 Mrps18c-203ENSMUST00000112901 820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Shmt1P50431 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Shmt1P50431 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Shmt1P50431 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC18.24■□□□□ 0.51
Shmt1P50431 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC18.24■□□□□ 0.51
Shmt1P50431 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
Shmt1P50431 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Shmt1P50431 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Shmt1P50431 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Shmt1P50431 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Shmt1P50431 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Shmt1P50431 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Shmt1P50431 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
Shmt1P50431 Spata18-202ENSMUST00000071077 1978 ntAPPRIS P2 TSL 5 BASIC18.24■□□□□ 0.51
Shmt1P50431 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Shmt1P50431 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Shmt1P50431 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Shmt1P50431 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC18.23■□□□□ 0.51
Shmt1P50431 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC18.23■□□□□ 0.51
Shmt1P50431 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Shmt1P50431 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Shmt1P50431 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Shmt1P50431 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Shmt1P50431 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Shmt1P50431 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Shmt1P50431 Gm45606-201ENSMUST00000209836 2795 ntBASIC18.23■□□□□ 0.51
Shmt1P50431 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Shmt1P50431 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Shmt1P50431 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Shmt1P50431 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Shmt1P50431 Hist1h4a-201ENSMUST00000102964 539 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Shmt1P50431 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Shmt1P50431 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Shmt1P50431 Tmem80-202ENSMUST00000126510 959 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Shmt1P50431 Gm16731-201ENSMUST00000132432 922 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Shmt1P50431 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC18.23■□□□□ 0.51
Shmt1P50431 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Shmt1P50431 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Shmt1P50431 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
Shmt1P50431 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Shmt1P50431 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Shmt1P50431 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Shmt1P50431 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
Shmt1P50431 Gm43808-201ENSMUST00000202534 2065 ntBASIC18.22■□□□□ 0.51
Shmt1P50431 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Shmt1P50431 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Shmt1P50431 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Shmt1P50431 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Shmt1P50431 Bub3-201ENSMUST00000084502 2218 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Shmt1P50431 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Shmt1P50431 Tm7sf2-201ENSMUST00000025713 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Shmt1P50431 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC18.22■□□□□ 0.51
Shmt1P50431 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Shmt1P50431 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Shmt1P50431 Gm2274-201ENSMUST00000184539 609 ntBASIC18.22■□□□□ 0.51
Shmt1P50431 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Shmt1P50431 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC18.22■□□□□ 0.51
Shmt1P50431 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
Shmt1P50431 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Shmt1P50431 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
Shmt1P50431 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Shmt1P50431 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Shmt1P50431 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Shmt1P50431 Gm37519-201ENSMUST00000191687 2210 ntBASIC18.22■□□□□ 0.51
Shmt1P50431 Mmd-202ENSMUST00000107887 1654 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Shmt1P50431 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC18.21■□□□□ 0.51
Shmt1P50431 2010016I18Rik-204ENSMUST00000190356 1562 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Shmt1P50431 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Shmt1P50431 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Shmt1P50431 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 36.2 ms