Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Vti1aO89116 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Vti1aO89116 Thsd7a-202ENSMUST00000119581 5678 ntAPPRIS P2 TSL 5 BASIC18.61■□□□□ 0.57
Vti1aO89116 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Vti1aO89116 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Vti1aO89116 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC18.61■□□□□ 0.57
Vti1aO89116 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Vti1aO89116 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC18.61■□□□□ 0.57
Vti1aO89116 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Vti1aO89116 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Vti1aO89116 Prss27-201ENSMUST00000059482 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Vti1aO89116 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Vti1aO89116 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Vti1aO89116 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Vti1aO89116 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Vti1aO89116 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
Vti1aO89116 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Vti1aO89116 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Vti1aO89116 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Vti1aO89116 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Vti1aO89116 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Vti1aO89116 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC18.6■□□□□ 0.57
Vti1aO89116 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Vti1aO89116 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Vti1aO89116 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Vti1aO89116 Gm37811-201ENSMUST00000192416 2601 ntBASIC18.6■□□□□ 0.57
Vti1aO89116 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Vti1aO89116 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Vti1aO89116 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC18.6■□□□□ 0.57
Vti1aO89116 Slc25a31-201ENSMUST00000091184 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Vti1aO89116 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Vti1aO89116 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC18.6■□□□□ 0.57
Vti1aO89116 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Vti1aO89116 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Vti1aO89116 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC18.6■□□□□ 0.57
Vti1aO89116 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Vti1aO89116 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Vti1aO89116 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Vti1aO89116 Inppl1-201ENSMUST00000035836 4995 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Vti1aO89116 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Vti1aO89116 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Vti1aO89116 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Vti1aO89116 Gm22697-201ENSMUST00000175194 63 ntBASIC18.59■□□□□ 0.57
Vti1aO89116 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Vti1aO89116 Gm18101-201ENSMUST00000215769 548 ntBASIC18.59■□□□□ 0.57
Vti1aO89116 Gm18032-201ENSMUST00000222541 538 ntBASIC18.59■□□□□ 0.57
Vti1aO89116 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC18.59■□□□□ 0.57
Vti1aO89116 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Vti1aO89116 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Vti1aO89116 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
Vti1aO89116 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.57
Vti1aO89116 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Vti1aO89116 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Vti1aO89116 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Vti1aO89116 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Vti1aO89116 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
Vti1aO89116 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Vti1aO89116 Gm14114-201ENSMUST00000139345 287 ntTSL 3 BASIC18.58■□□□□ 0.56
Vti1aO89116 Ccdc125-202ENSMUST00000170347 1216 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Vti1aO89116 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Vti1aO89116 Socs4-201ENSMUST00000065562 6877 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Vti1aO89116 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Vti1aO89116 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Vti1aO89116 Gm42900-201ENSMUST00000197184 2167 ntBASIC18.58■□□□□ 0.56
Vti1aO89116 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC18.58■□□□□ 0.56
Vti1aO89116 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Vti1aO89116 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Vti1aO89116 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Vti1aO89116 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Vti1aO89116 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
Vti1aO89116 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Vti1aO89116 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC18.57■□□□□ 0.56
Vti1aO89116 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Vti1aO89116 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Vti1aO89116 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC18.57■□□□□ 0.56
Vti1aO89116 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Vti1aO89116 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Vti1aO89116 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Vti1aO89116 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Vti1aO89116 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
Vti1aO89116 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
Vti1aO89116 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Vti1aO89116 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Vti1aO89116 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC18.56■□□□□ 0.56
Vti1aO89116 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Vti1aO89116 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Vti1aO89116 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Vti1aO89116 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Vti1aO89116 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
Vti1aO89116 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Vti1aO89116 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC18.55■□□□□ 0.56
Vti1aO89116 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vti1aO89116 Fcho2-208ENSMUST00000224992 2964 ntBASIC18.55■□□□□ 0.56
Vti1aO89116 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vti1aO89116 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vti1aO89116 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vti1aO89116 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Vti1aO89116 Gm6345-202ENSMUST00000180900 204 ntBASIC18.55■□□□□ 0.56
Vti1aO89116 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC18.55■□□□□ 0.56
Vti1aO89116 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 37.8 ms