Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Sdf4-204ENSMUST00000105579 1670 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Hmgb3O54879 Mir7075-201ENSMUST00000184187 82 ntBASIC14.37□□□□□ -0.11
Hmgb3O54879 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
Hmgb3O54879 Gm9847-201ENSMUST00000052528 599 ntBASIC14.37□□□□□ -0.11
Hmgb3O54879 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Hmgb3O54879 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Hmgb3O54879 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Hmgb3O54879 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
Hmgb3O54879 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
Hmgb3O54879 Pou2f2-209ENSMUST00000175774 7047 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
Hmgb3O54879 Atp8b2-210ENSMUST00000168276 4265 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
Hmgb3O54879 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Hmgb3O54879 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC14.36□□□□□ -0.11
Hmgb3O54879 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Hmgb3O54879 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
Hmgb3O54879 Nrip1-201ENSMUST00000054178 4529 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Hmgb3O54879 Rbbp7-203ENSMUST00000112327 1862 ntTSL 5 BASIC14.36□□□□□ -0.11
Hmgb3O54879 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Hmgb3O54879 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC14.36□□□□□ -0.11
Hmgb3O54879 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC14.36□□□□□ -0.11
Hmgb3O54879 AC140930.3-201ENSMUST00000222935 274 ntBASIC14.36□□□□□ -0.11
Hmgb3O54879 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Hmgb3O54879 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Hmgb3O54879 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Hmgb3O54879 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Hmgb3O54879 Zeb2-212ENSMUST00000176438 9124 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
Hmgb3O54879 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Hmgb3O54879 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Hmgb3O54879 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Hmgb3O54879 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Hmgb3O54879 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC14.36□□□□□ -0.11
Hmgb3O54879 Itga6-201ENSMUST00000028522 4310 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Hmgb3O54879 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Hmgb3O54879 Diaph2-207ENSMUST00000167619 8439 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Hmgb3O54879 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Hmgb3O54879 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Hmgb3O54879 Mdga2-201ENSMUST00000037181 9833 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Hmgb3O54879 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Hmgb3O54879 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Hmgb3O54879 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Hmgb3O54879 Gm43672-201ENSMUST00000199072 1731 ntBASIC14.35□□□□□ -0.11
Hmgb3O54879 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Hmgb3O54879 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Hmgb3O54879 Hs3st3b1-201ENSMUST00000094103 4911 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Hmgb3O54879 Mbtps2-201ENSMUST00000058098 4797 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Hmgb3O54879 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Hmgb3O54879 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Hmgb3O54879 Rasip1-201ENSMUST00000057927 3202 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Hmgb3O54879 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Hmgb3O54879 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Hmgb3O54879 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC14.35□□□□□ -0.11
Hmgb3O54879 Gm40848-201ENSMUST00000221998 324 ntBASIC14.35□□□□□ -0.11
Hmgb3O54879 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Hmgb3O54879 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Hmgb3O54879 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Hmgb3O54879 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Hmgb3O54879 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Hmgb3O54879 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Hmgb3O54879 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb3O54879 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb3O54879 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb3O54879 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb3O54879 Ptprv-210ENSMUST00000183317 6108 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb3O54879 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb3O54879 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb3O54879 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb3O54879 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb3O54879 Usp20-202ENSMUST00000102849 5088 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb3O54879 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb3O54879 Ptpn5-201ENSMUST00000033142 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb3O54879 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
Hmgb3O54879 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb3O54879 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Hmgb3O54879 Hectd1-201ENSMUST00000042052 8988 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Hmgb3O54879 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb3O54879 Wdr86-201ENSMUST00000068693 2364 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
Hmgb3O54879 Zfp618-203ENSMUST00000107415 8826 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Hmgb3O54879 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb3O54879 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb3O54879 Nrap-201ENSMUST00000040711 5334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb3O54879 Dnajc6-202ENSMUST00000094953 5322 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Hmgb3O54879 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Hmgb3O54879 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Hmgb3O54879 Gm38345-201ENSMUST00000192635 1748 ntBASIC14.33□□□□□ -0.12
Hmgb3O54879 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC14.33□□□□□ -0.12
Hmgb3O54879 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Hmgb3O54879 Tmem2-201ENSMUST00000025663 6585 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Hmgb3O54879 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Hmgb3O54879 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Hmgb3O54879 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC14.33□□□□□ -0.12
Hmgb3O54879 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
Hmgb3O54879 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC14.33□□□□□ -0.12
Hmgb3O54879 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Hmgb3O54879 Ccdc71l-201ENSMUST00000172332 4240 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Hmgb3O54879 Idnk-204ENSMUST00000226010 1898 ntBASIC14.33□□□□□ -0.12
Hmgb3O54879 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Hmgb3O54879 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Hmgb3O54879 Ankle1-202ENSMUST00000120725 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Hmgb3O54879 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Hmgb3O54879 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 39.1 ms