Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm45137-201ENSMUST00000208652 4415 ntBASIC3.9□□□□□ -1.78
ShhQ62226 Gm37668-201ENSMUST00000193745 1944 ntBASIC3.9□□□□□ -1.78
ShhQ62226 AC115891.1-201ENSMUST00000215798 1755 ntBASIC3.9□□□□□ -1.79
ShhQ62226 Ank2-208ENSMUST00000182078 14305 ntAPPRIS P2 TSL 5 BASIC3.9□□□□□ -1.79
ShhQ62226 Cftr-203ENSMUST00000115406 4341 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.79
ShhQ62226 Mir669d-2-201ENSMUST00000116854 86 ntBASIC3.9□□□□□ -1.79
ShhQ62226 Gm12568-201ENSMUST00000117362 624 ntBASIC3.9□□□□□ -1.79
ShhQ62226 Gm7219-201ENSMUST00000119619 297 ntBASIC3.9□□□□□ -1.79
ShhQ62226 Gm25104-201ENSMUST00000122476 163 ntBASIC3.9□□□□□ -1.79
ShhQ62226 Gm10444-201ENSMUST00000126708 148 ntBASIC3.9□□□□□ -1.79
ShhQ62226 Gm13618-201ENSMUST00000128859 384 ntTSL 5 BASIC3.9□□□□□ -1.79
ShhQ62226 Gm4128-201ENSMUST00000154338 461 ntTSL 3 BASIC3.9□□□□□ -1.79
ShhQ62226 Gm24901-201ENSMUST00000158125 110 ntBASIC3.9□□□□□ -1.79
ShhQ62226 Cfap54-204ENSMUST00000164979 945 ntTSL 5 BASIC3.9□□□□□ -1.79
ShhQ62226 Gm20612-201ENSMUST00000176318 236 ntBASIC3.9□□□□□ -1.79
ShhQ62226 1700010L04Rik-202ENSMUST00000178848 786 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
ShhQ62226 Gm27233-201ENSMUST00000184030 307 ntBASIC3.9□□□□□ -1.79
ShhQ62226 Gm8151-201ENSMUST00000184817 871 ntBASIC3.9□□□□□ -1.79
ShhQ62226 Gm28390-201ENSMUST00000185212 700 ntBASIC3.9□□□□□ -1.79
ShhQ62226 Gm28255-201ENSMUST00000187101 694 ntBASIC3.9□□□□□ -1.79
ShhQ62226 9830004L10Rik-202ENSMUST00000188074 687 ntTSL 5 BASIC3.9□□□□□ -1.79
ShhQ62226 Gm5731-201ENSMUST00000190969 481 ntBASIC3.9□□□□□ -1.79
ShhQ62226 Ighv3-7-201ENSMUST00000193370 348 ntBASIC3.9□□□□□ -1.79
ShhQ62226 Gm37062-201ENSMUST00000195028 701 ntTSL 5 BASIC3.9□□□□□ -1.79
ShhQ62226 Gm38008-201ENSMUST00000195333 518 ntBASIC3.9□□□□□ -1.79
ShhQ62226 Gm43652-201ENSMUST00000196219 675 ntBASIC3.9□□□□□ -1.79
ShhQ62226 Gm43026-201ENSMUST00000202972 325 ntBASIC3.9□□□□□ -1.79
ShhQ62226 Kap-202ENSMUST00000203168 464 ntAPPRIS ALT2 TSL 3 BASIC3.9□□□□□ -1.79
ShhQ62226 Gm5876-201ENSMUST00000203735 243 ntBASIC3.9□□□□□ -1.79
ShhQ62226 Gm45735-201ENSMUST00000212779 319 ntBASIC3.9□□□□□ -1.79
ShhQ62226 Gm29809-201ENSMUST00000218423 493 ntBASIC3.9□□□□□ -1.79
ShhQ62226 Gm36173-201ENSMUST00000219101 1163 ntTSL 1 (best) BASIC3.9□□□□□ -1.79
ShhQ62226 AC166369.1-201ENSMUST00000228126 351 ntBASIC3.9□□□□□ -1.79
ShhQ62226 2010005H15Rik-201ENSMUST00000063539 294 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
ShhQ62226 Gm10038-201ENSMUST00000077233 441 ntBASIC3.9□□□□□ -1.79
ShhQ62226 Gm38240-201ENSMUST00000195110 2487 ntBASIC3.9□□□□□ -1.79
ShhQ62226 Gm37625-201ENSMUST00000194969 4872 ntBASIC3.9□□□□□ -1.79
ShhQ62226 Olfr613-201ENSMUST00000106888 5139 ntAPPRIS P1 BASIC3.9□□□□□ -1.79
ShhQ62226 Fam19a1-202ENSMUST00000122120 3252 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
ShhQ62226 Gm37011-201ENSMUST00000195543 2935 ntBASIC3.9□□□□□ -1.79
ShhQ62226 AI314180-203ENSMUST00000107557 4946 ntAPPRIS ALT2 TSL 1 (best) BASIC3.9□□□□□ -1.79
ShhQ62226 Cp-205ENSMUST00000108329 4564 ntAPPRIS ALT2 TSL 5 BASIC3.9□□□□□ -1.79
ShhQ62226 Mmrn1-201ENSMUST00000129603 4477 ntAPPRIS P3 TSL 1 (best) BASIC3.89□□□□□ -1.79
ShhQ62226 Olfr988-203ENSMUST00000215511 1906 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
ShhQ62226 Elavl4-202ENSMUST00000102723 4024 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
ShhQ62226 Gm43200-201ENSMUST00000200385 2161 ntBASIC3.89□□□□□ -1.79
ShhQ62226 Jmjd1c-206ENSMUST00000173689 8609 ntAPPRIS ALT2 TSL 2 BASIC3.89□□□□□ -1.79
ShhQ62226 Olfr575-203ENSMUST00000216420 3500 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
ShhQ62226 Gm25727-201ENSMUST00000104522 131 ntBASIC3.89□□□□□ -1.79
ShhQ62226 Gm14399-205ENSMUST00000109062 626 ntTSL 5 BASIC3.89□□□□□ -1.79
ShhQ62226 Gm24590-201ENSMUST00000116699 119 ntBASIC3.89□□□□□ -1.79
ShhQ62226 Gm12492-201ENSMUST00000117665 564 ntBASIC3.89□□□□□ -1.79
ShhQ62226 Gm15426-201ENSMUST00000117823 556 ntBASIC3.89□□□□□ -1.79
ShhQ62226 Gm6923-201ENSMUST00000118343 406 ntBASIC3.89□□□□□ -1.79
ShhQ62226 Gm12900-201ENSMUST00000120919 573 ntBASIC3.89□□□□□ -1.79
ShhQ62226 Gm5379-201ENSMUST00000120973 826 ntBASIC3.89□□□□□ -1.79
ShhQ62226 Etaa1os-202ENSMUST00000148496 388 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
ShhQ62226 Gm13596-201ENSMUST00000153354 292 ntTSL 5 BASIC3.89□□□□□ -1.79
ShhQ62226 Gm25706-201ENSMUST00000157828 247 ntBASIC3.89□□□□□ -1.79
ShhQ62226 Gm22968-201ENSMUST00000157955 118 ntBASIC3.89□□□□□ -1.79
ShhQ62226 Gm23112-201ENSMUST00000158606 125 ntBASIC3.89□□□□□ -1.79
ShhQ62226 Gm5263-201ENSMUST00000163646 601 ntBASIC3.89□□□□□ -1.79
ShhQ62226 Gm3191-201ENSMUST00000167139 346 ntBASIC3.89□□□□□ -1.79
ShhQ62226 Ear-ps3-201ENSMUST00000168308 445 ntBASIC3.89□□□□□ -1.79
ShhQ62226 Gm7173-203ENSMUST00000179788 1254 ntTSL 5 BASIC3.89□□□□□ -1.79
ShhQ62226 Sult2a6-202ENSMUST00000184731 664 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
ShhQ62226 Gm29452-201ENSMUST00000187996 313 ntBASIC3.89□□□□□ -1.79
ShhQ62226 Gm28860-201ENSMUST00000188103 313 ntBASIC3.89□□□□□ -1.79
ShhQ62226 Gm28151-201ENSMUST00000189404 951 ntBASIC3.89□□□□□ -1.79
ShhQ62226 Gm37104-201ENSMUST00000193278 196 ntBASIC3.89□□□□□ -1.79
ShhQ62226 Gm43007-201ENSMUST00000197618 291 ntBASIC3.89□□□□□ -1.79
ShhQ62226 Gm44059-201ENSMUST00000204048 351 ntBASIC3.89□□□□□ -1.79
ShhQ62226 Gm44521-201ENSMUST00000206469 217 ntBASIC3.89□□□□□ -1.79
ShhQ62226 AC153971.2-201ENSMUST00000214553 777 ntBASIC3.89□□□□□ -1.79
ShhQ62226 AC116465.1-201ENSMUST00000220324 235 ntBASIC3.89□□□□□ -1.79
ShhQ62226 Gm17890-201ENSMUST00000221419 757 ntBASIC3.89□□□□□ -1.79
ShhQ62226 AC136976.1-201ENSMUST00000221440 381 ntTSL 3 BASIC3.89□□□□□ -1.79
ShhQ62226 Gm23510-201ENSMUST00000083083 163 ntBASIC3.89□□□□□ -1.79
ShhQ62226 Vmn1r87-201ENSMUST00000094827 888 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
ShhQ62226 Fam205c-202ENSMUST00000107978 1451 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
ShhQ62226 Olfr113-201ENSMUST00000216181 1671 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
ShhQ62226 Nebl-202ENSMUST00000124270 8079 ntTSL 5 BASIC3.89□□□□□ -1.79
ShhQ62226 C2cd6-201ENSMUST00000097080 2131 ntAPPRIS P1 TSL 2 BASIC3.89□□□□□ -1.79
ShhQ62226 Vmn1r185-212ENSMUST00000228633 5385 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
ShhQ62226 Vmn1r66-201ENSMUST00000060374 1524 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
ShhQ62226 Gm10340-201ENSMUST00000170790 1755 ntAPPRIS P1 TSL 5 BASIC3.89□□□□□ -1.79
ShhQ62226 Gm7173-201ENSMUST00000101410 2832 ntAPPRIS P4 TSL 5 BASIC3.89□□□□□ -1.79
ShhQ62226 Gm11782-201ENSMUST00000131675 2804 ntTSL 1 (best) BASIC3.89□□□□□ -1.79
ShhQ62226 Elf1-202ENSMUST00000110835 3888 ntAPPRIS P2 TSL 1 (best) BASIC3.89□□□□□ -1.79
ShhQ62226 D130004A15Rik-201ENSMUST00000201492 1577 ntBASIC3.89□□□□□ -1.79
ShhQ62226 Gtf3c3-201ENSMUST00000041638 4582 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
ShhQ62226 Kctd4-201ENSMUST00000050120 3998 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
ShhQ62226 AC154462.1-201ENSMUST00000228897 2260 ntBASIC3.88□□□□□ -1.79
ShhQ62226 Gm3055-202ENSMUST00000218939 4067 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
ShhQ62226 Zfp781-202ENSMUST00000219144 4067 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
ShhQ62226 CT009510.2-203ENSMUST00000226704 2136 ntBASIC3.88□□□□□ -1.79
ShhQ62226 Vmn2r93-201ENSMUST00000079206 2574 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
ShhQ62226 AC134596.1-201ENSMUST00000222016 1922 ntBASIC3.88□□□□□ -1.79
ShhQ62226 Gm24281-201ENSMUST00000104234 136 ntBASIC3.88□□□□□ -1.79
ShhQ62226 Cd59b-204ENSMUST00000111132 436 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
Retrieved 100 of 76,532 protein–RNA pairs in 107.1 ms