Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Gm43513-201ENSMUST00000199779 1076 ntBASIC5.03□□□□□ -1.6
Ddb1Q3U1J4 Gm43227-201ENSMUST00000202239 677 ntBASIC5.03□□□□□ -1.6
Ddb1Q3U1J4 Gm43449-201ENSMUST00000202955 371 ntTSL 3 BASIC5.03□□□□□ -1.6
Ddb1Q3U1J4 Gm44125-201ENSMUST00000203068 448 ntBASIC5.03□□□□□ -1.6
Ddb1Q3U1J4 Gm44513-201ENSMUST00000206811 439 ntBASIC5.03□□□□□ -1.6
Ddb1Q3U1J4 Spcs2-202ENSMUST00000207063 727 ntTSL 2 BASIC5.03□□□□□ -1.6
Ddb1Q3U1J4 Gm44910-201ENSMUST00000208451 396 ntBASIC5.03□□□□□ -1.6
Ddb1Q3U1J4 AC145736.1-201ENSMUST00000214661 479 ntBASIC5.03□□□□□ -1.6
Ddb1Q3U1J4 Gm46124-201ENSMUST00000215223 808 ntTSL 5 BASIC5.03□□□□□ -1.6
Ddb1Q3U1J4 Gm18774-201ENSMUST00000218269 601 ntBASIC5.03□□□□□ -1.6
Ddb1Q3U1J4 Gm29884-201ENSMUST00000218403 453 ntBASIC5.03□□□□□ -1.6
Ddb1Q3U1J4 AC140285.1-201ENSMUST00000220472 452 ntTSL 3 BASIC5.03□□□□□ -1.6
Ddb1Q3U1J4 AC154224.1-201ENSMUST00000224367 403 ntBASIC5.03□□□□□ -1.6
Ddb1Q3U1J4 Gm10237-201ENSMUST00000078393 273 ntBASIC5.03□□□□□ -1.6
Ddb1Q3U1J4 Gm23939-201ENSMUST00000082880 133 ntBASIC5.03□□□□□ -1.6
Ddb1Q3U1J4 Gm23677-201ENSMUST00000083156 104 ntBASIC5.03□□□□□ -1.6
Ddb1Q3U1J4 Gm10717-204ENSMUST00000099056 669 ntTSL 5 BASIC5.03□□□□□ -1.6
Ddb1Q3U1J4 Olfr993-201ENSMUST00000099926 945 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
Ddb1Q3U1J4 Cysltr1-202ENSMUST00000113480 5142 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
Ddb1Q3U1J4 Gm21814-203ENSMUST00000203729 1352 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
Ddb1Q3U1J4 Zfp738-203ENSMUST00000137496 13215 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
Ddb1Q3U1J4 Olfr1369-ps1-202ENSMUST00000213326 3707 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
Ddb1Q3U1J4 Csnka2ip-202ENSMUST00000209382 2859 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
Ddb1Q3U1J4 Gm37625-201ENSMUST00000194969 4872 ntBASIC5.02□□□□□ -1.61
Ddb1Q3U1J4 Gm45352-201ENSMUST00000210140 1452 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
Ddb1Q3U1J4 Stag2-201ENSMUST00000069619 5825 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
Ddb1Q3U1J4 Olfr50-202ENSMUST00000216753 4531 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
Ddb1Q3U1J4 Gm43824-201ENSMUST00000199042 2588 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
Ddb1Q3U1J4 Olfr887-202ENSMUST00000212502 6281 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
Ddb1Q3U1J4 Trdv5-201ENSMUST00000103685 438 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
Ddb1Q3U1J4 Gm22936-201ENSMUST00000103955 126 ntBASIC5.02□□□□□ -1.61
Ddb1Q3U1J4 Gm11600-201ENSMUST00000119592 240 ntBASIC5.02□□□□□ -1.61
Ddb1Q3U1J4 Gm11534-201ENSMUST00000125956 204 ntTSL 3 BASIC5.02□□□□□ -1.61
Ddb1Q3U1J4 Gm23198-201ENSMUST00000158811 91 ntBASIC5.02□□□□□ -1.61
Ddb1Q3U1J4 Gm6625-201ENSMUST00000177870 272 ntBASIC5.02□□□□□ -1.61
Ddb1Q3U1J4 Gm19503-201ENSMUST00000187109 241 ntBASIC5.02□□□□□ -1.61
Ddb1Q3U1J4 1700066N21Rik-201ENSMUST00000190123 783 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
Ddb1Q3U1J4 Gm37054-201ENSMUST00000193481 543 ntBASIC5.02□□□□□ -1.61
Ddb1Q3U1J4 Gm43730-201ENSMUST00000199863 372 ntBASIC5.02□□□□□ -1.61
Ddb1Q3U1J4 Gm45366-201ENSMUST00000209828 384 ntBASIC5.02□□□□□ -1.61
Ddb1Q3U1J4 Olfr593-202ENSMUST00000210686 951 ntAPPRIS ALT2 BASIC5.02□□□□□ -1.61
Ddb1Q3U1J4 4930545L08Rik-201ENSMUST00000215688 566 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
Ddb1Q3U1J4 4930455B14Rik-203ENSMUST00000223613 640 ntBASIC5.02□□□□□ -1.61
Ddb1Q3U1J4 Olfr16-201ENSMUST00000038432 1050 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
Ddb1Q3U1J4 Sval3-201ENSMUST00000080742 550 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
Ddb1Q3U1J4 Gm25126-201ENSMUST00000083343 102 ntBASIC5.02□□□□□ -1.61
Ddb1Q3U1J4 Gm23733-201ENSMUST00000083750 106 ntBASIC5.02□□□□□ -1.61
Ddb1Q3U1J4 Olfr992-203ENSMUST00000214895 2222 ntAPPRIS P1 TSL 3 BASIC5.02□□□□□ -1.61
Ddb1Q3U1J4 Gm44625-201ENSMUST00000207838 1561 ntBASIC5.02□□□□□ -1.61
Ddb1Q3U1J4 Mid2-203ENSMUST00000112993 5916 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
Ddb1Q3U1J4 Olfr393-202ENSMUST00000213365 4048 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 Usp15-211ENSMUST00000220377 11525 ntAPPRIS P2 TSL 1 (best) BASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 Olfr102-202ENSMUST00000217590 2783 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 Vmn1r169-203ENSMUST00000227547 2322 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 Adam34-201ENSMUST00000110411 2584 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 Gm5117-201ENSMUST00000178878 2553 ntBASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 Rpl38-ps2-201ENSMUST00000117356 213 ntBASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 Gm12149-201ENSMUST00000117511 654 ntBASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 Gm8129-201ENSMUST00000118230 213 ntBASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 Gm13627-201ENSMUST00000119700 706 ntBASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 Vmn1r-ps106-201ENSMUST00000120587 824 ntBASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 Gm2005-201ENSMUST00000120759 542 ntBASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 Rpl39-ps-202ENSMUST00000146505 151 ntBASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 Gm13596-201ENSMUST00000153354 292 ntTSL 5 BASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 Gm23591-201ENSMUST00000157663 286 ntBASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 Gm26159-201ENSMUST00000158968 104 ntBASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 Gm15689-201ENSMUST00000160604 1159 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 Gm14527-201ENSMUST00000179300 639 ntBASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 Gm27828-201ENSMUST00000184108 119 ntBASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 Mir496b-201ENSMUST00000184935 113 ntBASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 Smcp-202ENSMUST00000194965 744 ntAPPRIS P1 TSL 3 BASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 Igkv12-49-201ENSMUST00000197714 278 ntBASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 D030025E07Rik-205ENSMUST00000198478 418 ntTSL 3 BASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 Olfr1435-ps1-201ENSMUST00000207773 249 ntBASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 Gm18597-201ENSMUST00000209519 694 ntBASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 Gm21007-201ENSMUST00000221024 326 ntBASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 Gm33424-201ENSMUST00000222317 257 ntTSL 5 BASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 Ly6e-ps1-201ENSMUST00000222501 367 ntBASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 AL590614.1-201ENSMUST00000226037 268 ntBASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 AC144628.1-201ENSMUST00000227943 466 ntBASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 AC158981.3-202ENSMUST00000228906 523 ntBASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 Olfr787-201ENSMUST00000077836 939 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 Gm23297-201ENSMUST00000083184 127 ntBASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 Mir128-1-201ENSMUST00000083586 70 ntBASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 Mir101b-201ENSMUST00000083622 97 ntBASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 Olfr1167-201ENSMUST00000099832 1100 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 Olfr1164-201ENSMUST00000099834 1112 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 Erbin-207ENSMUST00000191275 5552 ntAPPRIS P3 TSL 1 (best) BASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 Pih1h3b-201ENSMUST00000044806 1509 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 4932411N23Rik-201ENSMUST00000081074 3407 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
Ddb1Q3U1J4 AC135119.1-201ENSMUST00000227935 3717 ntBASIC5□□□□□ -1.61
Ddb1Q3U1J4 Fzd3-202ENSMUST00000131309 12734 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
Ddb1Q3U1J4 AC113059.2-201ENSMUST00000213462 3016 ntBASIC5□□□□□ -1.61
Ddb1Q3U1J4 Zfp992-201ENSMUST00000105733 4550 ntAPPRIS P1 TSL 3 BASIC5□□□□□ -1.61
Ddb1Q3U1J4 AC140397.1-201ENSMUST00000225563 4562 ntBASIC5□□□□□ -1.61
Ddb1Q3U1J4 Gm19335-201ENSMUST00000195836 2069 ntBASIC5□□□□□ -1.61
Ddb1Q3U1J4 Olfr1408-202ENSMUST00000200689 3453 ntAPPRIS P1 TSL 3 BASIC5□□□□□ -1.61
Ddb1Q3U1J4 Ccser2-201ENSMUST00000067700 7334 ntTSL 5 BASIC5□□□□□ -1.61
Ddb1Q3U1J4 Trac-201ENSMUST00000103740 413 ntAPPRIS P1 BASIC5□□□□□ -1.61
Ddb1Q3U1J4 Gm25563-201ENSMUST00000104603 74 ntBASIC5□□□□□ -1.61
Retrieved 100 of 76,532 protein–RNA pairs in 81.5 ms