Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm14419-204ENSMUST00000178182 192 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
ShhQ62226 Gm2004-202ENSMUST00000178872 192 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
ShhQ62226 Gm14295-203ENSMUST00000179435 192 ntTSL 5 BASIC3.92□□□□□ -1.78
ShhQ62226 Fam122c-203ENSMUST00000186314 898 ntAPPRIS P1 TSL 2 BASIC3.92□□□□□ -1.78
ShhQ62226 Gm28594-201ENSMUST00000187022 661 ntBASIC3.92□□□□□ -1.78
ShhQ62226 Scgb2b28-ps-201ENSMUST00000188974 337 ntBASIC3.92□□□□□ -1.78
ShhQ62226 Ighv1-6-201ENSMUST00000193849 293 ntBASIC3.92□□□□□ -1.78
ShhQ62226 Gm38080-201ENSMUST00000194035 268 ntBASIC3.92□□□□□ -1.78
ShhQ62226 Gm38093-201ENSMUST00000195210 710 ntTSL 3 BASIC3.92□□□□□ -1.78
ShhQ62226 Gm42604-201ENSMUST00000200077 801 ntTSL 3 BASIC3.92□□□□□ -1.78
ShhQ62226 Gm43954-201ENSMUST00000204634 544 ntBASIC3.92□□□□□ -1.78
ShhQ62226 Gm44923-201ENSMUST00000206673 85 ntBASIC3.92□□□□□ -1.78
ShhQ62226 Gm44754-201ENSMUST00000208155 400 ntBASIC3.92□□□□□ -1.78
ShhQ62226 Gm34783-201ENSMUST00000209159 303 ntBASIC3.92□□□□□ -1.78
ShhQ62226 AC166060.1-201ENSMUST00000213509 425 ntTSL 5 BASIC3.92□□□□□ -1.78
ShhQ62226 AC069561.2-201ENSMUST00000217596 420 ntBASIC3.92□□□□□ -1.78
ShhQ62226 Gm19441-201ENSMUST00000221545 330 ntBASIC3.92□□□□□ -1.78
ShhQ62226 AC187103.4-202ENSMUST00000225091 230 ntBASIC3.92□□□□□ -1.78
ShhQ62226 AC154738.5-201ENSMUST00000227397 310 ntBASIC3.92□□□□□ -1.78
ShhQ62226 Gm23614-201ENSMUST00000082598 107 ntBASIC3.92□□□□□ -1.78
ShhQ62226 Vmn1r81-201ENSMUST00000086232 921 ntAPPRIS P2 BASIC3.92□□□□□ -1.78
ShhQ62226 Gm7237-201ENSMUST00000148435 1401 ntTSL 5 BASIC3.92□□□□□ -1.78
ShhQ62226 Gm43374-201ENSMUST00000202498 2391 ntBASIC3.92□□□□□ -1.78
ShhQ62226 AC163660.3-201ENSMUST00000224253 1563 ntBASIC3.92□□□□□ -1.78
ShhQ62226 Olfr388-ps1-201ENSMUST00000118336 2129 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
ShhQ62226 Gm43662-201ENSMUST00000198310 2271 ntBASIC3.92□□□□□ -1.78
ShhQ62226 Gm14305-203ENSMUST00000108983 1497 ntAPPRIS P1 TSL 3 BASIC3.92□□□□□ -1.78
ShhQ62226 Gm2026-202ENSMUST00000109008 1497 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
ShhQ62226 Gm4724-202ENSMUST00000109046 1497 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
ShhQ62226 Gm4631-201ENSMUST00000109050 1494 ntTSL 5 BASIC3.92□□□□□ -1.78
ShhQ62226 Gm14434-203ENSMUST00000122097 1497 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
ShhQ62226 Gm11007-202ENSMUST00000178120 1497 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
ShhQ62226 Gm2007-202ENSMUST00000178133 1497 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
ShhQ62226 Gm11007-203ENSMUST00000185834 1494 ntTSL 5 BASIC3.92□□□□□ -1.78
ShhQ62226 Gm2007-203ENSMUST00000189494 1494 ntTSL 5 BASIC3.92□□□□□ -1.78
ShhQ62226 Gm43527-201ENSMUST00000198749 3178 ntBASIC3.92□□□□□ -1.78
ShhQ62226 Serpinb3a-201ENSMUST00000027567 1620 ntAPPRIS P1 TSL 1 (best) BASIC3.92□□□□□ -1.78
ShhQ62226 Olfr1037-204ENSMUST00000216886 1755 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
ShhQ62226 Fsd1l-203ENSMUST00000132151 7467 ntAPPRIS P2 TSL 5 BASIC3.91□□□□□ -1.78
ShhQ62226 Gm31371-201ENSMUST00000211848 2088 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
ShhQ62226 Olfr1269-202ENSMUST00000214404 3535 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
ShhQ62226 Gm42680-201ENSMUST00000196238 2500 ntBASIC3.91□□□□□ -1.78
ShhQ62226 Btbd35f17-201ENSMUST00000105014 1960 ntAPPRIS P1 BASIC3.91□□□□□ -1.78
ShhQ62226 Olfr247-202ENSMUST00000215871 1983 ntAPPRIS P5 TSL 5 BASIC3.91□□□□□ -1.78
ShhQ62226 Olfr1014-202ENSMUST00000213453 2447 ntAPPRIS P1 TSL 3 BASIC3.91□□□□□ -1.78
ShhQ62226 Nlrp4b-202ENSMUST00000117413 3326 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
ShhQ62226 Stk-ps2-201ENSMUST00000051224 4667 ntTSL 2 BASIC3.91□□□□□ -1.78
ShhQ62226 Cep290-206ENSMUST00000219765 7985 ntTSL 5 BASIC3.91□□□□□ -1.78
ShhQ62226 Gm24120-201ENSMUST00000103978 129 ntBASIC3.91□□□□□ -1.78
ShhQ62226 Gm25168-201ENSMUST00000104189 132 ntBASIC3.91□□□□□ -1.78
ShhQ62226 Gm23175-201ENSMUST00000104371 132 ntBASIC3.91□□□□□ -1.78
ShhQ62226 Gm12311-201ENSMUST00000118803 374 ntBASIC3.91□□□□□ -1.78
ShhQ62226 Gm12335-201ENSMUST00000119738 327 ntBASIC3.91□□□□□ -1.78
ShhQ62226 Gm14362-201ENSMUST00000121679 273 ntBASIC3.91□□□□□ -1.78
ShhQ62226 Gm15962-201ENSMUST00000124184 750 ntTSL 3 BASIC3.91□□□□□ -1.78
ShhQ62226 Mup-ps12-201ENSMUST00000126217 549 ntBASIC3.91□□□□□ -1.78
ShhQ62226 2310016D23Rik-201ENSMUST00000130082 388 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
ShhQ62226 Gm15254-201ENSMUST00000149567 273 ntBASIC3.91□□□□□ -1.78
ShhQ62226 Gm22059-201ENSMUST00000157544 104 ntBASIC3.91□□□□□ -1.78
ShhQ62226 Gm23499-201ENSMUST00000157736 268 ntBASIC3.91□□□□□ -1.78
ShhQ62226 Gm25365-201ENSMUST00000158852 121 ntBASIC3.91□□□□□ -1.78
ShhQ62226 Gm26159-201ENSMUST00000158968 104 ntBASIC3.91□□□□□ -1.78
ShhQ62226 Gm16243-201ENSMUST00000160351 494 ntTSL 3 BASIC3.91□□□□□ -1.78
ShhQ62226 Gm4222-201ENSMUST00000165784 470 ntBASIC3.91□□□□□ -1.78
ShhQ62226 Gm29556-201ENSMUST00000187591 696 ntBASIC3.91□□□□□ -1.78
ShhQ62226 Gm29633-204ENSMUST00000187737 675 ntTSL 5 BASIC3.91□□□□□ -1.78
ShhQ62226 Gm28404-201ENSMUST00000190242 453 ntBASIC3.91□□□□□ -1.78
ShhQ62226 Gm36984-201ENSMUST00000192770 235 ntBASIC3.91□□□□□ -1.78
ShhQ62226 Gm37817-201ENSMUST00000195276 434 ntBASIC3.91□□□□□ -1.78
ShhQ62226 Csn1s2a-203ENSMUST00000196749 917 ntAPPRIS ALT2 TSL 1 (best) BASIC3.91□□□□□ -1.78
ShhQ62226 Gm43541-201ENSMUST00000197208 581 ntBASIC3.91□□□□□ -1.78
ShhQ62226 Gm43735-201ENSMUST00000198245 809 ntTSL 1 (best) BASIC3.91□□□□□ -1.78
ShhQ62226 Gm43825-201ENSMUST00000199650 734 ntBASIC3.91□□□□□ -1.78
ShhQ62226 Gm44353-201ENSMUST00000200618 138 ntBASIC3.91□□□□□ -1.78
ShhQ62226 Gm2676-201ENSMUST00000207279 606 ntBASIC3.91□□□□□ -1.78
ShhQ62226 Gm44543-201ENSMUST00000209136 396 ntBASIC3.91□□□□□ -1.78
ShhQ62226 Olfr1130-201ENSMUST00000213103 2643 ntAPPRIS P1 TSL 3 BASIC3.91□□□□□ -1.78
ShhQ62226 AC158641.1-201ENSMUST00000218933 229 ntBASIC3.91□□□□□ -1.78
ShhQ62226 AC157570.3-201ENSMUST00000219281 205 ntBASIC3.91□□□□□ -1.78
ShhQ62226 Gm7540-201ENSMUST00000219764 926 ntBASIC3.91□□□□□ -1.78
ShhQ62226 Gm33958-201ENSMUST00000222879 450 ntTSL 5 BASIC3.91□□□□□ -1.78
ShhQ62226 Gm30155-201ENSMUST00000223458 339 ntBASIC3.91□□□□□ -1.78
ShhQ62226 AC158392.2-201ENSMUST00000225402 969 ntBASIC3.91□□□□□ -1.78
ShhQ62226 AC139350.4-201ENSMUST00000228483 798 ntBASIC3.91□□□□□ -1.78
ShhQ62226 Arl13a-201ENSMUST00000064476 1740 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
ShhQ62226 n-R5s162-201ENSMUST00000082581 119 ntBASIC3.91□□□□□ -1.78
ShhQ62226 Gm45804-201ENSMUST00000212137 3435 ntBASIC3.91□□□□□ -1.78
ShhQ62226 Olfr406-203ENSMUST00000217016 2651 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
ShhQ62226 Olfr843-202ENSMUST00000214019 7499 ntAPPRIS P1 TSL 5 BASIC3.91□□□□□ -1.78
ShhQ62226 Phf11c-201ENSMUST00000166912 3459 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
ShhQ62226 Gm43260-201ENSMUST00000197378 2430 ntBASIC3.91□□□□□ -1.78
ShhQ62226 Gm35191-201ENSMUST00000200925 2475 ntTSL 1 (best) BASIC3.9□□□□□ -1.78
ShhQ62226 Olfr905-202ENSMUST00000214377 4429 ntAPPRIS P1 TSL 5 BASIC3.9□□□□□ -1.78
ShhQ62226 Gm7905-201ENSMUST00000119933 1386 ntBASIC3.9□□□□□ -1.78
ShhQ62226 Gm6207-201ENSMUST00000120075 1386 ntBASIC3.9□□□□□ -1.78
ShhQ62226 Gm6228-201ENSMUST00000178856 1386 ntBASIC3.9□□□□□ -1.78
ShhQ62226 Gm6221-201ENSMUST00000180064 1386 ntBASIC3.9□□□□□ -1.78
ShhQ62226 AC126673.3-201ENSMUST00000223414 3829 ntBASIC3.9□□□□□ -1.78
ShhQ62226 AC123858.1-201ENSMUST00000226948 1874 ntBASIC3.9□□□□□ -1.78
ShhQ62226 Gm7195-201ENSMUST00000190869 1707 ntBASIC3.9□□□□□ -1.78
Retrieved 100 of 76,532 protein–RNA pairs in 82.2 ms