Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Olfr848-ps1-201ENSMUST00000212241 930 ntBASIC3.94□□□□□ -1.78
ShhQ62226 Gm7495-201ENSMUST00000215099 426 ntBASIC3.94□□□□□ -1.78
ShhQ62226 AC152062.1-201ENSMUST00000218129 386 ntBASIC3.94□□□□□ -1.78
ShhQ62226 AC157017.2-201ENSMUST00000218354 777 ntBASIC3.94□□□□□ -1.78
ShhQ62226 Gm31849-201ENSMUST00000220306 375 ntBASIC3.94□□□□□ -1.78
ShhQ62226 4930559C10Rik-201ENSMUST00000223202 649 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
ShhQ62226 Gm30409-201ENSMUST00000223302 229 ntTSL 3 BASIC3.94□□□□□ -1.78
ShhQ62226 AC102291.2-201ENSMUST00000228083 367 ntBASIC3.94□□□□□ -1.78
ShhQ62226 AC154532.2-201ENSMUST00000228947 598 ntBASIC3.94□□□□□ -1.78
ShhQ62226 Olfr164-201ENSMUST00000056727 1095 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
ShhQ62226 Olfr340-201ENSMUST00000072854 939 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
ShhQ62226 Gm6462-201ENSMUST00000081488 304 ntBASIC3.94□□□□□ -1.78
ShhQ62226 Olfr1309-206ENSMUST00000217452 5257 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
ShhQ62226 Gm13972-201ENSMUST00000153726 3164 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
ShhQ62226 Olfr128-202ENSMUST00000216440 3644 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
ShhQ62226 Cntn6-205ENSMUST00000162872 3467 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
ShhQ62226 AC156560.3-201ENSMUST00000222978 3841 ntBASIC3.94□□□□□ -1.78
ShhQ62226 Cubn-201ENSMUST00000091436 11262 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
ShhQ62226 Olfr118-203ENSMUST00000216551 1772 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
ShhQ62226 Gm43958-201ENSMUST00000204360 3544 ntBASIC3.94□□□□□ -1.78
ShhQ62226 AC156025.1-201ENSMUST00000223597 3551 ntBASIC3.93□□□□□ -1.78
ShhQ62226 Zfp708-201ENSMUST00000109742 2416 ntAPPRIS P2 TSL 1 (best) BASIC3.93□□□□□ -1.78
ShhQ62226 Gm28362-201ENSMUST00000189430 2420 ntBASIC3.93□□□□□ -1.78
ShhQ62226 Zfp981-201ENSMUST00000105735 3038 ntAPPRIS P1 TSL 2 BASIC3.93□□□□□ -1.78
ShhQ62226 A630033H20Rik-201ENSMUST00000067249 3004 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
ShhQ62226 2210418O10Rik-203ENSMUST00000136719 2314 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
ShhQ62226 Polk-205ENSMUST00000221899 2319 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
ShhQ62226 Ocrl-202ENSMUST00000115013 2910 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
ShhQ62226 Zfp955a-201ENSMUST00000008830 1638 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
ShhQ62226 Ghr-208ENSMUST00000161561 2749 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
ShhQ62226 Mir105-201ENSMUST00000104655 80 ntBASIC3.93□□□□□ -1.78
ShhQ62226 Klra10-201ENSMUST00000112020 823 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
ShhQ62226 Xlr5a-202ENSMUST00000114520 867 ntAPPRIS P1 TSL 3 BASIC3.93□□□□□ -1.78
ShhQ62226 Gm4758-201ENSMUST00000114851 291 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
ShhQ62226 Gm7834-201ENSMUST00000117560 437 ntBASIC3.93□□□□□ -1.78
ShhQ62226 Gm11512-201ENSMUST00000119669 663 ntBASIC3.93□□□□□ -1.78
ShhQ62226 Gm25883-201ENSMUST00000157781 271 ntBASIC3.93□□□□□ -1.78
ShhQ62226 Gm26373-201ENSMUST00000157833 103 ntBASIC3.93□□□□□ -1.78
ShhQ62226 Gm25456-201ENSMUST00000157952 109 ntBASIC3.93□□□□□ -1.78
ShhQ62226 Gm25163-201ENSMUST00000158905 104 ntBASIC3.93□□□□□ -1.78
ShhQ62226 Gm25670-201ENSMUST00000178423 107 ntBASIC3.93□□□□□ -1.78
ShhQ62226 Gm26239-201ENSMUST00000178842 107 ntBASIC3.93□□□□□ -1.78
ShhQ62226 Gm24267-201ENSMUST00000179841 107 ntBASIC3.93□□□□□ -1.78
ShhQ62226 Gm8649-201ENSMUST00000181799 233 ntBASIC3.93□□□□□ -1.78
ShhQ62226 Gm10292-201ENSMUST00000183142 581 ntBASIC3.93□□□□□ -1.78
ShhQ62226 Gm17946-201ENSMUST00000186856 538 ntBASIC3.93□□□□□ -1.78
ShhQ62226 Gm28612-201ENSMUST00000189214 416 ntTSL 5 BASIC3.93□□□□□ -1.78
ShhQ62226 Gm38075-201ENSMUST00000191979 920 ntBASIC3.93□□□□□ -1.78
ShhQ62226 Gm37111-201ENSMUST00000193250 634 ntBASIC3.93□□□□□ -1.78
ShhQ62226 Gm37050-201ENSMUST00000193464 466 ntBASIC3.93□□□□□ -1.78
ShhQ62226 Smr2-202ENSMUST00000196070 813 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
ShhQ62226 Gm43710-201ENSMUST00000199583 452 ntBASIC3.93□□□□□ -1.78
ShhQ62226 Gm36633-201ENSMUST00000205873 647 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
ShhQ62226 Cyp2b26-ps-201ENSMUST00000206238 1090 ntBASIC3.93□□□□□ -1.78
ShhQ62226 Spcs2-205ENSMUST00000207580 868 ntTSL 5 BASIC3.93□□□□□ -1.78
ShhQ62226 4930598N05Rik-204ENSMUST00000207733 675 ntTSL 3 BASIC3.93□□□□□ -1.78
ShhQ62226 AC125531.1-201ENSMUST00000219849 221 ntBASIC3.93□□□□□ -1.78
ShhQ62226 Gm2446-201ENSMUST00000220144 772 ntBASIC3.93□□□□□ -1.78
ShhQ62226 AC131720.2-201ENSMUST00000220420 431 ntBASIC3.93□□□□□ -1.78
ShhQ62226 Gm46312-201ENSMUST00000220961 420 ntBASIC3.93□□□□□ -1.78
ShhQ62226 AC159619.2-201ENSMUST00000222924 401 ntBASIC3.93□□□□□ -1.78
ShhQ62226 Gm24292-201ENSMUST00000082888 107 ntBASIC3.93□□□□□ -1.78
ShhQ62226 Olfr203-201ENSMUST00000089305 924 ntBASIC3.93□□□□□ -1.78
ShhQ62226 Gm13340-201ENSMUST00000117219 1545 ntBASIC3.93□□□□□ -1.78
ShhQ62226 March1-202ENSMUST00000072482 3953 ntTSL 5 BASIC3.93□□□□□ -1.78
ShhQ62226 Tcp11x2-201ENSMUST00000078605 1776 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
ShhQ62226 Fscb-201ENSMUST00000059833 3361 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
ShhQ62226 Vmn1r47-202ENSMUST00000227229 6733 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
ShhQ62226 Vmn1r47-204ENSMUST00000228680 6717 ntAPPRIS P1 BASIC3.93□□□□□ -1.78
ShhQ62226 Olfr235-202ENSMUST00000207969 2447 ntAPPRIS P1 TSL 3 BASIC3.93□□□□□ -1.78
ShhQ62226 Gm45884-201ENSMUST00000209540 3416 ntBASIC3.93□□□□□ -1.78
ShhQ62226 Adam5-201ENSMUST00000050300 2560 ntAPPRIS ALT2 TSL 1 (best) BASIC3.93□□□□□ -1.78
ShhQ62226 Mrpl1-203ENSMUST00000121477 1550 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
ShhQ62226 Olfr799-205ENSMUST00000217364 1580 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
ShhQ62226 3110080E11Rik-201ENSMUST00000210736 3477 ntBASIC3.93□□□□□ -1.78
ShhQ62226 Nebl-206ENSMUST00000131957 1709 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
ShhQ62226 Gm2824-202ENSMUST00000180955 3522 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
ShhQ62226 Rps6ka3-204ENSMUST00000112493 3671 ntTSL 5 BASIC3.92□□□□□ -1.78
ShhQ62226 Fam135a-206ENSMUST00000187369 4976 ntAPPRIS ALT2 TSL 5 BASIC3.92□□□□□ -1.78
ShhQ62226 4930510E17Rik-201ENSMUST00000034550 1639 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
ShhQ62226 Zfp616-201ENSMUST00000074813 5014 ntTSL 1 (best) BASIC3.92□□□□□ -1.78
ShhQ62226 Vmn1r46-202ENSMUST00000205088 10770 ntAPPRIS P1 TSL 2 BASIC3.92□□□□□ -1.78
ShhQ62226 Gm8104-201ENSMUST00000168165 1761 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
ShhQ62226 Zfp72-202ENSMUST00000223163 4153 ntAPPRIS P1 TSL 5 BASIC3.92□□□□□ -1.78
ShhQ62226 Mir592-201ENSMUST00000102113 96 ntBASIC3.92□□□□□ -1.78
ShhQ62226 Igkv1-131-201ENSMUST00000103306 362 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
ShhQ62226 Gm24127-201ENSMUST00000104110 130 ntBASIC3.92□□□□□ -1.78
ShhQ62226 Gm12719-201ENSMUST00000118859 241 ntBASIC3.92□□□□□ -1.78
ShhQ62226 Gm12739-201ENSMUST00000119769 382 ntBASIC3.92□□□□□ -1.78
ShhQ62226 Gm13339-201ENSMUST00000120651 510 ntBASIC3.92□□□□□ -1.78
ShhQ62226 Clec2f-201ENSMUST00000121051 374 ntBASIC3.92□□□□□ -1.78
ShhQ62226 Gm14366-201ENSMUST00000121970 730 ntBASIC3.92□□□□□ -1.78
ShhQ62226 Gm25106-201ENSMUST00000122672 134 ntBASIC3.92□□□□□ -1.78
ShhQ62226 Gm12708-201ENSMUST00000126143 349 ntTSL 5 BASIC3.92□□□□□ -1.78
ShhQ62226 Gm25965-201ENSMUST00000157170 93 ntBASIC3.92□□□□□ -1.78
ShhQ62226 Gm24060-201ENSMUST00000157494 95 ntBASIC3.92□□□□□ -1.78
ShhQ62226 Gm23098-201ENSMUST00000157552 299 ntBASIC3.92□□□□□ -1.78
ShhQ62226 Vmn1r238-201ENSMUST00000165255 921 ntAPPRIS P1 BASIC3.92□□□□□ -1.78
ShhQ62226 Gm22859-201ENSMUST00000174978 122 ntBASIC3.92□□□□□ -1.78
ShhQ62226 Mir5101-201ENSMUST00000175181 83 ntBASIC3.92□□□□□ -1.78
Retrieved 100 of 76,532 protein–RNA pairs in 104.1 ms