Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm29647-201ENSMUST00000188795 666 ntBASIC3.96□□□□□ -1.78
ShhQ62226 Gm28654-201ENSMUST00000189801 379 ntBASIC3.96□□□□□ -1.78
ShhQ62226 Gm28552-201ENSMUST00000190725 388 ntBASIC3.96□□□□□ -1.78
ShhQ62226 Gm28504-201ENSMUST00000190977 666 ntBASIC3.96□□□□□ -1.78
ShhQ62226 Gm19694-201ENSMUST00000192364 505 ntBASIC3.96□□□□□ -1.78
ShhQ62226 Gm35843-201ENSMUST00000193716 666 ntBASIC3.96□□□□□ -1.78
ShhQ62226 Gm44354-201ENSMUST00000196017 143 ntBASIC3.96□□□□□ -1.78
ShhQ62226 Gm19418-201ENSMUST00000197436 580 ntBASIC3.96□□□□□ -1.78
ShhQ62226 Gm42438-201ENSMUST00000197832 974 ntBASIC3.96□□□□□ -1.78
ShhQ62226 Gm42818-201ENSMUST00000198869 987 ntBASIC3.96□□□□□ -1.78
ShhQ62226 Gm5551-201ENSMUST00000199720 690 ntBASIC3.96□□□□□ -1.78
ShhQ62226 Gm43578-201ENSMUST00000201250 459 ntBASIC3.96□□□□□ -1.78
ShhQ62226 Gm45049-201ENSMUST00000207586 591 ntBASIC3.96□□□□□ -1.78
ShhQ62226 Gm45498-201ENSMUST00000210346 283 ntBASIC3.96□□□□□ -1.78
ShhQ62226 Olfr613-202ENSMUST00000214173 3840 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
ShhQ62226 AC133207.3-201ENSMUST00000217694 464 ntTSL 3 BASIC3.96□□□□□ -1.78
ShhQ62226 4930556N09Rik-202ENSMUST00000219466 1015 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
ShhQ62226 CT030704.1-201ENSMUST00000227521 699 ntBASIC3.96□□□□□ -1.78
ShhQ62226 AC100733.1-201ENSMUST00000228494 407 ntBASIC3.96□□□□□ -1.78
ShhQ62226 Sprr2f-201ENSMUST00000050397 609 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
ShhQ62226 Olfr1202-201ENSMUST00000072057 930 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
ShhQ62226 Mucl1-201ENSMUST00000078842 621 ntAPPRIS ALT2 BASIC3.96□□□□□ -1.78
ShhQ62226 Gm23503-201ENSMUST00000083903 107 ntBASIC3.96□□□□□ -1.78
ShhQ62226 Gm5168-201ENSMUST00000089165 824 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
ShhQ62226 Olfr1090-201ENSMUST00000099875 942 ntAPPRIS P1 BASIC3.96□□□□□ -1.78
ShhQ62226 Olfr709-ps1-202ENSMUST00000215468 5078 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
ShhQ62226 Olfr111-202ENSMUST00000214259 2620 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
ShhQ62226 Olfr1263-204ENSMUST00000217065 4186 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
ShhQ62226 Olfr1280-203ENSMUST00000219291 6883 ntAPPRIS P1 TSL 3 BASIC3.96□□□□□ -1.78
ShhQ62226 Olfr1331-202ENSMUST00000106360 3230 ntAPPRIS P2 TSL 5 BASIC3.96□□□□□ -1.78
ShhQ62226 Vmn1r228-201ENSMUST00000072410 1443 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
ShhQ62226 Gm609-201ENSMUST00000114585 2122 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
ShhQ62226 Gpm6a-201ENSMUST00000033915 3215 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
ShhQ62226 Atp1b4-201ENSMUST00000016471 4201 ntAPPRIS P1 TSL 1 (best) BASIC3.95□□□□□ -1.78
ShhQ62226 Gm25088-201ENSMUST00000101803 79 ntBASIC3.95□□□□□ -1.78
ShhQ62226 Pbsn-202ENSMUST00000114041 697 ntTSL 2 BASIC3.95□□□□□ -1.78
ShhQ62226 Celf2-203ENSMUST00000114923 529 ntTSL 3 BASIC3.95□□□□□ -1.78
ShhQ62226 Gm14292-201ENSMUST00000118761 456 ntBASIC3.95□□□□□ -1.78
ShhQ62226 Gm14915-201ENSMUST00000120747 204 ntBASIC3.95□□□□□ -1.78
ShhQ62226 Gm23538-201ENSMUST00000157535 101 ntBASIC3.95□□□□□ -1.78
ShhQ62226 Gm3851-201ENSMUST00000168653 318 ntBASIC3.95□□□□□ -1.78
ShhQ62226 Gm23816-201ENSMUST00000179617 132 ntBASIC3.95□□□□□ -1.78
ShhQ62226 Mir6408-201ENSMUST00000183643 91 ntBASIC3.95□□□□□ -1.78
ShhQ62226 Mir6541-201ENSMUST00000183649 110 ntBASIC3.95□□□□□ -1.78
ShhQ62226 Gm28146-201ENSMUST00000185517 701 ntBASIC3.95□□□□□ -1.78
ShhQ62226 Gm28574-201ENSMUST00000185757 699 ntBASIC3.95□□□□□ -1.78
ShhQ62226 Gm28397-201ENSMUST00000187970 699 ntBASIC3.95□□□□□ -1.78
ShhQ62226 Gm29366-201ENSMUST00000190481 699 ntBASIC3.95□□□□□ -1.78
ShhQ62226 Gm37892-201ENSMUST00000192018 437 ntTSL 3 BASIC3.95□□□□□ -1.78
ShhQ62226 Gm38316-201ENSMUST00000194838 469 ntTSL 5 BASIC3.95□□□□□ -1.78
ShhQ62226 Gm37119-201ENSMUST00000195691 389 ntBASIC3.95□□□□□ -1.78
ShhQ62226 Gm43586-201ENSMUST00000195948 310 ntBASIC3.95□□□□□ -1.78
ShhQ62226 Gm43043-201ENSMUST00000196579 412 ntBASIC3.95□□□□□ -1.78
ShhQ62226 Gm43494-201ENSMUST00000197672 388 ntBASIC3.95□□□□□ -1.78
ShhQ62226 Gm43001-202ENSMUST00000199076 192 ntTSL 3 BASIC3.95□□□□□ -1.78
ShhQ62226 4930595L18Rik-201ENSMUST00000204069 506 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
ShhQ62226 Gm32772-201ENSMUST00000205898 594 ntTSL 3 BASIC3.95□□□□□ -1.78
ShhQ62226 Gm3442-201ENSMUST00000216808 710 ntBASIC3.95□□□□□ -1.78
ShhQ62226 AC122397.2-201ENSMUST00000227422 686 ntBASIC3.95□□□□□ -1.78
ShhQ62226 AC115735.3-201ENSMUST00000227757 513 ntBASIC3.95□□□□□ -1.78
ShhQ62226 AC158981.3-202ENSMUST00000228906 523 ntBASIC3.95□□□□□ -1.78
ShhQ62226 Gm9762-201ENSMUST00000036976 444 ntBASIC3.95□□□□□ -1.78
ShhQ62226 Gm5265-201ENSMUST00000076828 342 ntBASIC3.95□□□□□ -1.78
ShhQ62226 Olfr1369-ps1-201ENSMUST00000079050 954 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
ShhQ62226 Gm10717-202ENSMUST00000099042 669 ntAPPRIS P5 TSL 5 BASIC3.95□□□□□ -1.78
ShhQ62226 Olfr1249-201ENSMUST00000099769 957 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
ShhQ62226 Gm43913-201ENSMUST00000203924 3029 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
ShhQ62226 Gm8744-201ENSMUST00000204475 3581 ntBASIC3.95□□□□□ -1.78
ShhQ62226 Olfr970-203ENSMUST00000215922 1739 ntAPPRIS P1 TSL 3 BASIC3.95□□□□□ -1.78
ShhQ62226 Gm45131-201ENSMUST00000208051 2582 ntBASIC3.95□□□□□ -1.78
ShhQ62226 Slfn8-202ENSMUST00000092838 3529 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
ShhQ62226 Olfr33-202ENSMUST00000216312 2372 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
ShhQ62226 Vmn1r52-202ENSMUST00000226520 3125 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
ShhQ62226 Gm37412-201ENSMUST00000194866 4321 ntBASIC3.94□□□□□ -1.78
ShhQ62226 Olfr32-205ENSMUST00000215659 2998 ntAPPRIS P1 TSL 3 BASIC3.94□□□□□ -1.78
ShhQ62226 Gm37630-201ENSMUST00000194210 1456 ntBASIC3.94□□□□□ -1.78
ShhQ62226 Olfr951-202ENSMUST00000216107 1947 ntAPPRIS ALT2 TSL 3 BASIC3.94□□□□□ -1.78
ShhQ62226 Olfr1507-203ENSMUST00000206062 2803 ntAPPRIS P1 TSL 2 BASIC3.94□□□□□ -1.78
ShhQ62226 Igkv14-100-201ENSMUST00000103325 350 ntAPPRIS ALT2 BASIC3.94□□□□□ -1.78
ShhQ62226 Gm25833-201ENSMUST00000104137 133 ntBASIC3.94□□□□□ -1.78
ShhQ62226 Gm12268-201ENSMUST00000118398 442 ntBASIC3.94□□□□□ -1.78
ShhQ62226 Gm11830-201ENSMUST00000120175 561 ntBASIC3.94□□□□□ -1.78
ShhQ62226 Gm12897-201ENSMUST00000120341 250 ntBASIC3.94□□□□□ -1.78
ShhQ62226 Gm15177-201ENSMUST00000120491 577 ntBASIC3.94□□□□□ -1.78
ShhQ62226 Gm12095-201ENSMUST00000121962 816 ntBASIC3.94□□□□□ -1.78
ShhQ62226 Gm25177-201ENSMUST00000122634 117 ntBASIC3.94□□□□□ -1.78
ShhQ62226 2810403D21Rik-203ENSMUST00000131640 546 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
ShhQ62226 Zfp950-205ENSMUST00000148569 192 ntTSL 5 BASIC3.94□□□□□ -1.78
ShhQ62226 Gm23865-201ENSMUST00000157723 97 ntBASIC3.94□□□□□ -1.78
ShhQ62226 Gm3030-201ENSMUST00000163410 516 ntBASIC3.94□□□□□ -1.78
ShhQ62226 Gm24306-201ENSMUST00000180229 79 ntBASIC3.94□□□□□ -1.78
ShhQ62226 Gm27313-201ENSMUST00000183500 142 ntBASIC3.94□□□□□ -1.78
ShhQ62226 Gm27695-201ENSMUST00000184301 91 ntBASIC3.94□□□□□ -1.78
ShhQ62226 Gm8296-201ENSMUST00000185597 524 ntBASIC3.94□□□□□ -1.78
ShhQ62226 Smr2-204ENSMUST00000199635 680 ntAPPRIS ALT2 TSL 1 (best) BASIC3.94□□□□□ -1.78
ShhQ62226 Gm43101-202ENSMUST00000201733 488 ntTSL 2 BASIC3.94□□□□□ -1.78
ShhQ62226 Gm45023-201ENSMUST00000207951 379 ntBASIC3.94□□□□□ -1.78
ShhQ62226 Gm18602-201ENSMUST00000209794 851 ntBASIC3.94□□□□□ -1.78
ShhQ62226 Gm6303-201ENSMUST00000210123 471 ntBASIC3.94□□□□□ -1.78
ShhQ62226 Gm8423-201ENSMUST00000211387 607 ntBASIC3.94□□□□□ -1.78
Retrieved 100 of 76,532 protein–RNA pairs in 82.3 ms