Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Olfr1186-201ENSMUST00000121619 1090 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
ShhQ62226 Gm12087-201ENSMUST00000121878 258 ntBASIC3.98□□□□□ -1.77
ShhQ62226 Chrna1os-201ENSMUST00000125413 680 ntTSL 3 BASIC3.98□□□□□ -1.77
ShhQ62226 Gm11775-201ENSMUST00000136500 773 ntTSL 5 BASIC3.98□□□□□ -1.77
ShhQ62226 Gm16274-201ENSMUST00000139251 592 ntBASIC3.98□□□□□ -1.77
ShhQ62226 Gm13324-201ENSMUST00000148607 569 ntTSL 3 BASIC3.98□□□□□ -1.77
ShhQ62226 Mir1946a-201ENSMUST00000158360 134 ntBASIC3.98□□□□□ -1.77
ShhQ62226 Gm24503-201ENSMUST00000158454 135 ntBASIC3.98□□□□□ -1.77
ShhQ62226 Obox4-ps8-201ENSMUST00000175831 714 ntBASIC3.98□□□□□ -1.77
ShhQ62226 Gm22584-201ENSMUST00000177935 92 ntBASIC3.98□□□□□ -1.77
ShhQ62226 Ighv6-5-201ENSMUST00000179796 297 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
ShhQ62226 Gm26988-201ENSMUST00000183296 945 ntBASIC3.98□□□□□ -1.77
ShhQ62226 Mir6341-201ENSMUST00000183490 121 ntBASIC3.98□□□□□ -1.77
ShhQ62226 Gm18356-201ENSMUST00000185677 623 ntBASIC3.98□□□□□ -1.77
ShhQ62226 Gm21095-202ENSMUST00000185776 923 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
ShhQ62226 Scgb2b6-201ENSMUST00000188132 330 ntBASIC3.98□□□□□ -1.77
ShhQ62226 Gm43470-202ENSMUST00000198573 227 ntTSL 3 BASIC3.98□□□□□ -1.77
ShhQ62226 Gm19457-201ENSMUST00000200995 448 ntBASIC3.98□□□□□ -1.77
ShhQ62226 Gm43227-201ENSMUST00000202239 677 ntBASIC3.98□□□□□ -1.77
ShhQ62226 Gm43635-201ENSMUST00000202533 352 ntTSL 3 BASIC3.98□□□□□ -1.77
ShhQ62226 Gm6112-201ENSMUST00000208037 629 ntBASIC3.98□□□□□ -1.77
ShhQ62226 Gm18194-201ENSMUST00000210455 481 ntBASIC3.98□□□□□ -1.77
ShhQ62226 Olfr1119-ps1-201ENSMUST00000215282 634 ntBASIC3.98□□□□□ -1.77
ShhQ62226 Gm18703-201ENSMUST00000215318 333 ntBASIC3.98□□□□□ -1.77
ShhQ62226 AC087891.1-201ENSMUST00000217867 318 ntTSL 5 BASIC3.98□□□□□ -1.77
ShhQ62226 CT030242.2-201ENSMUST00000221588 148 ntBASIC3.98□□□□□ -1.77
ShhQ62226 Ly6e-ps1-201ENSMUST00000222501 367 ntBASIC3.98□□□□□ -1.77
ShhQ62226 AC239878.1-201ENSMUST00000224212 506 ntBASIC3.98□□□□□ -1.77
ShhQ62226 Olfr395-201ENSMUST00000072991 939 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
ShhQ62226 Csn1s2a-201ENSMUST00000076379 920 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
ShhQ62226 Gm26206-201ENSMUST00000082908 110 ntBASIC3.98□□□□□ -1.77
ShhQ62226 Rny3-201ENSMUST00000083011 102 ntBASIC3.98□□□□□ -1.77
ShhQ62226 Mir202-201ENSMUST00000083568 72 ntBASIC3.98□□□□□ -1.77
ShhQ62226 Gm17655-202ENSMUST00000210275 1776 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
ShhQ62226 Olfr711-201ENSMUST00000051715 3035 ntAPPRIS P1 TSL 2 BASIC3.98□□□□□ -1.77
ShhQ62226 Gm3972-201ENSMUST00000173960 2861 ntBASIC3.98□□□□□ -1.77
ShhQ62226 Hm629797-201ENSMUST00000183645 2398 ntBASIC3.98□□□□□ -1.77
ShhQ62226 Olfr1037-202ENSMUST00000213333 1610 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
ShhQ62226 Olfr1163-202ENSMUST00000215268 1611 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
ShhQ62226 Eya4-208ENSMUST00000220299 3615 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
ShhQ62226 Vmn1r216-203ENSMUST00000228389 10213 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
ShhQ62226 Klhl13-205ENSMUST00000115319 3349 ntAPPRIS P2 TSL 1 (best) BASIC3.98□□□□□ -1.77
ShhQ62226 Olfr741-203ENSMUST00000213903 3305 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
ShhQ62226 Cwf19l2-201ENSMUST00000027027 4446 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
ShhQ62226 Dnah7a-201ENSMUST00000094964 12245 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
ShhQ62226 Ddx3y-201ENSMUST00000091190 4600 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
ShhQ62226 Olfr735-202ENSMUST00000216634 3860 ntAPPRIS ALT2 TSL 3 BASIC3.97□□□□□ -1.77
ShhQ62226 Vmn1r90-207ENSMUST00000227692 7101 ntAPPRIS P2 BASIC3.97□□□□□ -1.77
ShhQ62226 Gm12458-201ENSMUST00000119387 495 ntBASIC3.97□□□□□ -1.77
ShhQ62226 Gm12495-201ENSMUST00000119750 447 ntBASIC3.97□□□□□ -1.77
ShhQ62226 Gm7916-201ENSMUST00000120325 456 ntBASIC3.97□□□□□ -1.77
ShhQ62226 Gm14605-201ENSMUST00000120599 268 ntBASIC3.97□□□□□ -1.77
ShhQ62226 Rhox11-ps1-201ENSMUST00000121945 387 ntBASIC3.97□□□□□ -1.77
ShhQ62226 Gm24224-201ENSMUST00000158828 258 ntBASIC3.97□□□□□ -1.77
ShhQ62226 Mir6537-201ENSMUST00000184150 110 ntBASIC3.97□□□□□ -1.77
ShhQ62226 Gm28666-201ENSMUST00000186649 274 ntBASIC3.97□□□□□ -1.77
ShhQ62226 2610044O15Rik8-206ENSMUST00000191043 504 ntTSL 2 BASIC3.97□□□□□ -1.77
ShhQ62226 Gm38109-201ENSMUST00000195386 181 ntBASIC3.97□□□□□ -1.77
ShhQ62226 Gm44071-201ENSMUST00000204180 448 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
ShhQ62226 Gm9616-201ENSMUST00000221154 781 ntBASIC3.97□□□□□ -1.77
ShhQ62226 1700015C15Rik-201ENSMUST00000221465 374 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
ShhQ62226 Gm40477-202ENSMUST00000221505 881 ntTSL 3 BASIC3.97□□□□□ -1.77
ShhQ62226 AL590503.1-201ENSMUST00000222053 321 ntBASIC3.97□□□□□ -1.77
ShhQ62226 AC140451.2-202ENSMUST00000226156 574 ntBASIC3.97□□□□□ -1.77
ShhQ62226 Stfa1-201ENSMUST00000042097 418 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
ShhQ62226 Olfr830-201ENSMUST00000078861 948 ntAPPRIS P2 BASIC3.97□□□□□ -1.77
ShhQ62226 Olfr1490-201ENSMUST00000080162 951 ntAPPRIS P2 BASIC3.97□□□□□ -1.77
ShhQ62226 n-R5s166-201ENSMUST00000082898 121 ntBASIC3.97□□□□□ -1.77
ShhQ62226 Gm24610-201ENSMUST00000083270 109 ntBASIC3.97□□□□□ -1.77
ShhQ62226 Neb-202ENSMUST00000036934 22489 ntAPPRIS P2 TSL 5 BASIC3.97□□□□□ -1.77
ShhQ62226 Olfr32-204ENSMUST00000215153 3117 ntAPPRIS P1 TSL 2 BASIC3.97□□□□□ -1.77
ShhQ62226 Olfr1341-203ENSMUST00000215117 4700 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
ShhQ62226 Olfr801-204ENSMUST00000216067 4014 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
ShhQ62226 Gm37999-201ENSMUST00000195178 1809 ntBASIC3.97□□□□□ -1.77
ShhQ62226 Lrp1b-201ENSMUST00000052550 16294 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
ShhQ62226 Olfr1535-202ENSMUST00000217519 3959 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
ShhQ62226 Gm37461-201ENSMUST00000193929 3704 ntBASIC3.97□□□□□ -1.77
ShhQ62226 Olfr1366-202ENSMUST00000175637 3045 ntAPPRIS ALT2 TSL 3 BASIC3.97□□□□□ -1.77
ShhQ62226 Rbbp8-202ENSMUST00000115861 3523 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
ShhQ62226 C230031I18Rik-201ENSMUST00000197856 3698 ntBASIC3.96□□□□□ -1.78
ShhQ62226 AC137842.3-201ENSMUST00000228855 2397 ntBASIC3.96□□□□□ -1.78
ShhQ62226 Gm44789-201ENSMUST00000207195 3101 ntBASIC3.96□□□□□ -1.78
ShhQ62226 Gm44532-201ENSMUST00000207723 2598 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
ShhQ62226 Vmn2r26-201ENSMUST00000032238 2568 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
ShhQ62226 Olfr1143-202ENSMUST00000099852 2028 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
ShhQ62226 Gm5935-201ENSMUST00000101667 875 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
ShhQ62226 Tmc4-ps-201ENSMUST00000117819 258 ntBASIC3.96□□□□□ -1.78
ShhQ62226 Gm14815-201ENSMUST00000120060 488 ntBASIC3.96□□□□□ -1.78
ShhQ62226 Gm11448-201ENSMUST00000120427 450 ntBASIC3.96□□□□□ -1.78
ShhQ62226 Gm13625-201ENSMUST00000149283 480 ntTSL 5 BASIC3.96□□□□□ -1.78
ShhQ62226 Nell1os-203ENSMUST00000152166 410 ntTSL 2 BASIC3.96□□□□□ -1.78
ShhQ62226 Gm23391-201ENSMUST00000157579 104 ntBASIC3.96□□□□□ -1.78
ShhQ62226 Gm16101-201ENSMUST00000160695 430 ntBASIC3.96□□□□□ -1.78
ShhQ62226 Rpl30-ps6-201ENSMUST00000163337 348 ntBASIC3.96□□□□□ -1.78
ShhQ62226 Gm17103-201ENSMUST00000168897 549 ntTSL 3 BASIC3.96□□□□□ -1.78
ShhQ62226 Gm17159-201ENSMUST00000169043 482 ntBASIC3.96□□□□□ -1.78
ShhQ62226 Gm20526-201ENSMUST00000173416 158 ntBASIC3.96□□□□□ -1.78
ShhQ62226 Vmn2r-ps59-201ENSMUST00000174596 135 ntBASIC3.96□□□□□ -1.78
ShhQ62226 Rpl23a-ps8-201ENSMUST00000186144 463 ntBASIC3.96□□□□□ -1.78
ShhQ62226 Gm28785-201ENSMUST00000187478 379 ntBASIC3.96□□□□□ -1.78
Retrieved 100 of 76,532 protein–RNA pairs in 97 ms