Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm11829-201ENSMUST00000121003 282 ntBASIC4□□□□□ -1.77
ShhQ62226 Gm12693-201ENSMUST00000121965 483 ntBASIC4□□□□□ -1.77
ShhQ62226 Rap1gapos-201ENSMUST00000135358 471 ntTSL 1 (best) BASIC4□□□□□ -1.77
ShhQ62226 1700092C17Rik-201ENSMUST00000135792 424 ntTSL 1 (best) BASIC4□□□□□ -1.77
ShhQ62226 Gm22755-201ENSMUST00000157143 100 ntBASIC4□□□□□ -1.77
ShhQ62226 Gm23743-201ENSMUST00000157389 274 ntBASIC4□□□□□ -1.77
ShhQ62226 Gm1979-202ENSMUST00000170224 666 ntTSL 5 BASIC4□□□□□ -1.77
ShhQ62226 Gm21754-201ENSMUST00000177550 479 ntBASIC4□□□□□ -1.77
ShhQ62226 Gm25817-201ENSMUST00000177758 121 ntBASIC4□□□□□ -1.77
ShhQ62226 Gm25194-201ENSMUST00000177987 79 ntBASIC4□□□□□ -1.77
ShhQ62226 Gm24766-201ENSMUST00000179182 121 ntBASIC4□□□□□ -1.77
ShhQ62226 Gm27773-201ENSMUST00000184087 78 ntBASIC4□□□□□ -1.77
ShhQ62226 Gm28471-201ENSMUST00000185994 615 ntBASIC4□□□□□ -1.77
ShhQ62226 1810044D09Rik-201ENSMUST00000186472 486 ntTSL 1 (best) BASIC4□□□□□ -1.77
ShhQ62226 Gm42927-201ENSMUST00000200624 3841 ntBASIC4□□□□□ -1.77
ShhQ62226 Gm45715-201ENSMUST00000206991 434 ntTSL 3 BASIC4□□□□□ -1.77
ShhQ62226 Gm45086-201ENSMUST00000209052 462 ntTSL 5 BASIC4□□□□□ -1.77
ShhQ62226 Gm32531-201ENSMUST00000209324 373 ntTSL 3 BASIC4□□□□□ -1.77
ShhQ62226 Olfr593-202ENSMUST00000210686 951 ntAPPRIS ALT2 BASIC4□□□□□ -1.77
ShhQ62226 Olfr879-ps1-201ENSMUST00000212455 694 ntBASIC4□□□□□ -1.77
ShhQ62226 Olfr942-ps1-201ENSMUST00000215640 662 ntBASIC4□□□□□ -1.77
ShhQ62226 Gm20304-201ENSMUST00000218168 444 ntBASIC4□□□□□ -1.77
ShhQ62226 AL513022.1-201ENSMUST00000220489 504 ntTSL 5 BASIC4□□□□□ -1.77
ShhQ62226 Gm18113-201ENSMUST00000220630 303 ntBASIC4□□□□□ -1.77
ShhQ62226 Gm4779-201ENSMUST00000056225 672 ntTSL 5 BASIC4□□□□□ -1.77
ShhQ62226 Gm25008-201ENSMUST00000083809 81 ntBASIC4□□□□□ -1.77
ShhQ62226 Olfr593-201ENSMUST00000098206 984 ntAPPRIS P2 BASIC4□□□□□ -1.77
ShhQ62226 Vmn1r66-203ENSMUST00000227719 2765 ntAPPRIS P1 BASIC4□□□□□ -1.77
ShhQ62226 AC154548.1-201ENSMUST00000225844 3838 ntBASIC4□□□□□ -1.77
ShhQ62226 Peli1-202ENSMUST00000101477 3703 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
ShhQ62226 Polk-202ENSMUST00000091387 2382 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
ShhQ62226 Kif20b-201ENSMUST00000087341 5564 ntAPPRIS P2 TSL 5 BASIC3.99□□□□□ -1.77
ShhQ62226 Cntn3-201ENSMUST00000032159 5183 ntAPPRIS P1 TSL 2 BASIC3.99□□□□□ -1.77
ShhQ62226 Olfr736-202ENSMUST00000213402 2402 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
ShhQ62226 Gm3086-201ENSMUST00000110560 620 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
ShhQ62226 Gm15553-201ENSMUST00000118757 430 ntBASIC3.99□□□□□ -1.77
ShhQ62226 Gm14669-201ENSMUST00000118841 250 ntBASIC3.99□□□□□ -1.77
ShhQ62226 Gm13356-201ENSMUST00000121678 335 ntBASIC3.99□□□□□ -1.77
ShhQ62226 Gm15643-201ENSMUST00000126556 383 ntTSL 3 BASIC3.99□□□□□ -1.77
ShhQ62226 Gm13905-201ENSMUST00000140009 579 ntTSL 3 BASIC3.99□□□□□ -1.77
ShhQ62226 Gm12724-201ENSMUST00000140196 665 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
ShhQ62226 Gm12065-201ENSMUST00000149592 656 ntTSL 3 BASIC3.99□□□□□ -1.77
ShhQ62226 Gm25559-201ENSMUST00000157182 74 ntBASIC3.99□□□□□ -1.77
ShhQ62226 Gm22765-201ENSMUST00000158371 128 ntBASIC3.99□□□□□ -1.77
ShhQ62226 Gm24553-201ENSMUST00000158653 131 ntBASIC3.99□□□□□ -1.77
ShhQ62226 Gm16134-201ENSMUST00000161714 336 ntBASIC3.99□□□□□ -1.77
ShhQ62226 Gm16545-201ENSMUST00000161968 463 ntBASIC3.99□□□□□ -1.77
ShhQ62226 Gm17060-201ENSMUST00000172394 824 ntBASIC3.99□□□□□ -1.77
ShhQ62226 Malat1-203ENSMUST00000173499 485 ntTSL 3 BASIC3.99□□□□□ -1.77
ShhQ62226 Gm25999-201ENSMUST00000175398 133 ntBASIC3.99□□□□□ -1.77
ShhQ62226 Vmn1r-ps151-201ENSMUST00000176956 982 ntBASIC3.99□□□□□ -1.77
ShhQ62226 Nutf2-ps2-201ENSMUST00000179225 384 ntBASIC3.99□□□□□ -1.77
ShhQ62226 Gm21729-201ENSMUST00000180058 664 ntBASIC3.99□□□□□ -1.77
ShhQ62226 Gm21853-201ENSMUST00000180071 664 ntBASIC3.99□□□□□ -1.77
ShhQ62226 Hmgb1-ps8-201ENSMUST00000181542 626 ntBASIC3.99□□□□□ -1.77
ShhQ62226 Gm3434-202ENSMUST00000184421 521 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
ShhQ62226 Obox4-ps2-201ENSMUST00000185088 442 ntBASIC3.99□□□□□ -1.77
ShhQ62226 C530043A13Rik-201ENSMUST00000186453 550 ntTSL 3 BASIC3.99□□□□□ -1.77
ShhQ62226 Gm29045-201ENSMUST00000187278 698 ntBASIC3.99□□□□□ -1.77
ShhQ62226 Gm28494-201ENSMUST00000187687 562 ntTSL 5 BASIC3.99□□□□□ -1.77
ShhQ62226 Gm29495-201ENSMUST00000189319 664 ntBASIC3.99□□□□□ -1.77
ShhQ62226 Gm20811-201ENSMUST00000190500 553 ntBASIC3.99□□□□□ -1.77
ShhQ62226 Gm29522-201ENSMUST00000191530 621 ntTSL 5 BASIC3.99□□□□□ -1.77
ShhQ62226 Trbv12-3-201ENSMUST00000192675 372 ntBASIC3.99□□□□□ -1.77
ShhQ62226 Gm8790-201ENSMUST00000194108 322 ntBASIC3.99□□□□□ -1.77
ShhQ62226 2900037B21Rik-201ENSMUST00000194352 337 ntBASIC3.99□□□□□ -1.77
ShhQ62226 Fbxw23-201ENSMUST00000198015 425 ntTSL 2 BASIC3.99□□□□□ -1.77
ShhQ62226 2400006E01Rik-203ENSMUST00000199633 643 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
ShhQ62226 Gm43925-201ENSMUST00000203498 206 ntBASIC3.99□□□□□ -1.77
ShhQ62226 Gm7726-201ENSMUST00000206241 231 ntBASIC3.99□□□□□ -1.77
ShhQ62226 AC162931.1-201ENSMUST00000214184 267 ntBASIC3.99□□□□□ -1.77
ShhQ62226 Gm18488-201ENSMUST00000215082 364 ntBASIC3.99□□□□□ -1.77
ShhQ62226 4930563J15Rik-203ENSMUST00000219796 574 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
ShhQ62226 AC122924.2-201ENSMUST00000220799 298 ntBASIC3.99□□□□□ -1.77
ShhQ62226 Gm4036-201ENSMUST00000220842 626 ntBASIC3.99□□□□□ -1.77
ShhQ62226 1700024I08Rik-203ENSMUST00000222372 754 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
ShhQ62226 Vmn1r25-202ENSMUST00000228585 909 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
ShhQ62226 BC048502-201ENSMUST00000065978 718 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
ShhQ62226 Olfr967-201ENSMUST00000069561 933 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
ShhQ62226 n-R5s7-201ENSMUST00000083755 121 ntBASIC3.99□□□□□ -1.77
ShhQ62226 Gm37674-201ENSMUST00000194177 1834 ntBASIC3.99□□□□□ -1.77
ShhQ62226 5930435M05Rik-201ENSMUST00000207572 3712 ntBASIC3.99□□□□□ -1.77
ShhQ62226 Gm29730-201ENSMUST00000192986 1396 ntBASIC3.99□□□□□ -1.77
ShhQ62226 Zfp85-202ENSMUST00000144183 2312 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
ShhQ62226 Zfp942-201ENSMUST00000074295 1461 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
ShhQ62226 Gm43718-201ENSMUST00000197524 1857 ntBASIC3.98□□□□□ -1.77
ShhQ62226 Vmn1r171-204ENSMUST00000226733 2918 ntAPPRIS ALT2 BASIC3.98□□□□□ -1.77
ShhQ62226 Gm16892-201ENSMUST00000180999 1726 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
ShhQ62226 Gm20515-201ENSMUST00000174440 4824 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
ShhQ62226 Olfr934-202ENSMUST00000214324 2462 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
ShhQ62226 Skint3-201ENSMUST00000038455 3627 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
ShhQ62226 Gm281-201ENSMUST00000144914 2952 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
ShhQ62226 9330159F19Rik-202ENSMUST00000213489 2992 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
ShhQ62226 Zfp595-201ENSMUST00000109735 3896 ntAPPRIS P2 TSL 1 (best) BASIC3.98□□□□□ -1.77
ShhQ62226 Adam34-201ENSMUST00000110411 2584 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
ShhQ62226 Gm6096-201ENSMUST00000105172 456 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
ShhQ62226 Gm25848-201ENSMUST00000116790 144 ntBASIC3.98□□□□□ -1.77
ShhQ62226 Gm13386-201ENSMUST00000117677 124 ntBASIC3.98□□□□□ -1.77
ShhQ62226 Tpt1-ps3-201ENSMUST00000121046 519 ntBASIC3.98□□□□□ -1.77
ShhQ62226 Gm6079-201ENSMUST00000121356 404 ntBASIC3.98□□□□□ -1.77
Retrieved 100 of 76,532 protein–RNA pairs in 90.3 ms