Protein–RNA interactions for Protein: P39428

Traf1, TNF receptor-associated factor 1, mousemouse

Predictions only

Length 409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Traf1P39428 Gm31592-201ENSMUST00000217529 3471 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
Traf1P39428 Gm44527-202ENSMUST00000204519 1314 ntBASIC4.23□□□□□ -1.73
Traf1P39428 Olfr197-202ENSMUST00000207772 1320 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
Traf1P39428 Nae1-201ENSMUST00000034349 1808 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
Traf1P39428 Tfpi-202ENSMUST00000090732 3576 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
Traf1P39428 Dnah7b-201ENSMUST00000069293 12314 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
Traf1P39428 Gm42909-201ENSMUST00000196982 3619 ntBASIC4.23□□□□□ -1.73
Traf1P39428 Gm17655-202ENSMUST00000210275 1776 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
Traf1P39428 Iglv3-201ENSMUST00000103751 381 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
Traf1P39428 Gm15090-201ENSMUST00000118787 1196 ntBASIC4.23□□□□□ -1.73
Traf1P39428 Gm9001-201ENSMUST00000121642 399 ntBASIC4.23□□□□□ -1.73
Traf1P39428 Gm15089-201ENSMUST00000122332 1196 ntBASIC4.23□□□□□ -1.73
Traf1P39428 Gm13431-201ENSMUST00000122948 476 ntTSL 2 BASIC4.23□□□□□ -1.73
Traf1P39428 Zfp968-203ENSMUST00000131676 1272 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
Traf1P39428 Gm22890-201ENSMUST00000158642 144 ntBASIC4.23□□□□□ -1.73
Traf1P39428 Gm26005-201ENSMUST00000158802 134 ntBASIC4.23□□□□□ -1.73
Traf1P39428 Gm7346-201ENSMUST00000169661 476 ntBASIC4.23□□□□□ -1.73
Traf1P39428 Ptma-ps1-201ENSMUST00000181079 309 ntBASIC4.23□□□□□ -1.73
Traf1P39428 Gm26722-201ENSMUST00000181237 1048 ntTSL 5 BASIC4.23□□□□□ -1.73
Traf1P39428 Gm36467-202ENSMUST00000195606 622 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
Traf1P39428 Gm37290-201ENSMUST00000195775 339 ntBASIC4.23□□□□□ -1.73
Traf1P39428 Gm43155-201ENSMUST00000202661 494 ntBASIC4.23□□□□□ -1.73
Traf1P39428 4930595O18Rik-201ENSMUST00000205099 607 ntBASIC4.23□□□□□ -1.73
Traf1P39428 Gm18423-201ENSMUST00000205144 1074 ntBASIC4.23□□□□□ -1.73
Traf1P39428 Gm44634-201ENSMUST00000206119 152 ntBASIC4.23□□□□□ -1.73
Traf1P39428 Gm45696-201ENSMUST00000212088 985 ntBASIC4.23□□□□□ -1.73
Traf1P39428 AC069561.3-201ENSMUST00000217321 114 ntBASIC4.23□□□□□ -1.73
Traf1P39428 CT025611.2-201ENSMUST00000220475 879 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
Traf1P39428 CT010498.1-201ENSMUST00000225382 546 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
Traf1P39428 Stfa1-201ENSMUST00000042097 418 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
Traf1P39428 Ccr2-202ENSMUST00000165984 3515 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
Traf1P39428 6720427I07Rik-201ENSMUST00000181490 2300 ntBASIC4.23□□□□□ -1.73
Traf1P39428 Gm43736-201ENSMUST00000196377 2281 ntBASIC4.23□□□□□ -1.73
Traf1P39428 Gm38207-201ENSMUST00000193009 3505 ntBASIC4.22□□□□□ -1.73
Traf1P39428 Gm43259-201ENSMUST00000198446 3277 ntBASIC4.22□□□□□ -1.73
Traf1P39428 Skint4-202ENSMUST00000106564 3997 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
Traf1P39428 Skint4-204ENSMUST00000106566 3997 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
Traf1P39428 Rpl31-ps5-201ENSMUST00000118086 375 ntBASIC4.22□□□□□ -1.73
Traf1P39428 Gm13087-201ENSMUST00000118298 256 ntBASIC4.22□□□□□ -1.73
Traf1P39428 Gm15988-201ENSMUST00000118677 367 ntBASIC4.22□□□□□ -1.73
Traf1P39428 Gm13678-201ENSMUST00000118926 340 ntBASIC4.22□□□□□ -1.73
Traf1P39428 Gm14989-201ENSMUST00000120497 207 ntBASIC4.22□□□□□ -1.73
Traf1P39428 Cyp3a25-202ENSMUST00000138870 513 ntTSL 3 BASIC4.22□□□□□ -1.73
Traf1P39428 Gm23824-201ENSMUST00000158741 276 ntBASIC4.22□□□□□ -1.73
Traf1P39428 Gm27903-201ENSMUST00000175482 126 ntBASIC4.22□□□□□ -1.73
Traf1P39428 Gm20693-201ENSMUST00000177431 211 ntBASIC4.22□□□□□ -1.73
Traf1P39428 Esp15-201ENSMUST00000178929 1168 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
Traf1P39428 Mir6411-201ENSMUST00000183556 108 ntBASIC4.22□□□□□ -1.73
Traf1P39428 1700025M24Rik-203ENSMUST00000191524 725 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
Traf1P39428 Gm7299-201ENSMUST00000194441 581 ntBASIC4.22□□□□□ -1.73
Traf1P39428 4930404I20Rik-201ENSMUST00000203246 498 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
Traf1P39428 Olfr192-202ENSMUST00000205727 1141 ntAPPRIS P1 TSL 2 BASIC4.22□□□□□ -1.73
Traf1P39428 Gm10297-201ENSMUST00000207136 651 ntBASIC4.22□□□□□ -1.73
Traf1P39428 Gm44887-201ENSMUST00000208980 178 ntBASIC4.22□□□□□ -1.73
Traf1P39428 Gm45829-201ENSMUST00000212466 334 ntTSL 5 BASIC4.22□□□□□ -1.73
Traf1P39428 AC153948.1-201ENSMUST00000219080 3838 ntBASIC4.22□□□□□ -1.73
Traf1P39428 4930556N09Rik-202ENSMUST00000219466 1015 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
Traf1P39428 CT030684.2-201ENSMUST00000228946 826 ntBASIC4.22□□□□□ -1.73
Traf1P39428 Gm6176-202ENSMUST00000207633 1581 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
Traf1P39428 Olfr836-203ENSMUST00000215981 5046 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
Traf1P39428 Olfr44-202ENSMUST00000215065 3578 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
Traf1P39428 Olfr679-202ENSMUST00000214328 5184 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
Traf1P39428 Gm25560-201ENSMUST00000104606 176 ntBASIC4.21□□□□□ -1.74
Traf1P39428 Gm9157-201ENSMUST00000117673 225 ntBASIC4.21□□□□□ -1.74
Traf1P39428 Gm12543-201ENSMUST00000120410 543 ntBASIC4.21□□□□□ -1.74
Traf1P39428 Gm11252-201ENSMUST00000120572 939 ntBASIC4.21□□□□□ -1.74
Traf1P39428 Gm12693-201ENSMUST00000121965 483 ntBASIC4.21□□□□□ -1.74
Traf1P39428 Gm24739-201ENSMUST00000158855 292 ntBASIC4.21□□□□□ -1.74
Traf1P39428 Ear-ps12-201ENSMUST00000161720 451 ntBASIC4.21□□□□□ -1.74
Traf1P39428 Vmn2r-ps75-201ENSMUST00000173251 213 ntBASIC4.21□□□□□ -1.74
Traf1P39428 Gm27477-201ENSMUST00000184649 143 ntBASIC4.21□□□□□ -1.74
Traf1P39428 Gm38149-201ENSMUST00000191943 339 ntBASIC4.21□□□□□ -1.74
Traf1P39428 Gm44877-201ENSMUST00000206485 274 ntTSL 5 BASIC4.21□□□□□ -1.74
Traf1P39428 Gm5175-202ENSMUST00000219699 529 ntBASIC4.21□□□□□ -1.74
Traf1P39428 Gm35615-201ENSMUST00000221255 719 ntTSL 3 BASIC4.21□□□□□ -1.74
Traf1P39428 AC091783.5-201ENSMUST00000224928 671 ntBASIC4.21□□□□□ -1.74
Traf1P39428 CT485608.1-201ENSMUST00000228759 389 ntBASIC4.21□□□□□ -1.74
Traf1P39428 Vmn1r72-201ENSMUST00000053134 921 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
Traf1P39428 Olfr1256-201ENSMUST00000099763 921 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
Traf1P39428 Zfp945-205ENSMUST00000160457 6497 ntAPPRIS P4 TSL 1 (best) BASIC4.21□□□□□ -1.74
Traf1P39428 Gm45389-201ENSMUST00000211163 3399 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
Traf1P39428 Skint3-202ENSMUST00000170945 3843 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
Traf1P39428 Tex47-202ENSMUST00000159546 1402 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
Traf1P39428 Vmn1r228-201ENSMUST00000072410 1443 ntAPPRIS P1 BASIC4.21□□□□□ -1.74
Traf1P39428 Gm45352-201ENSMUST00000210140 1452 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
Traf1P39428 Olfr1211-204ENSMUST00000215205 4220 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
Traf1P39428 Gm45263-201ENSMUST00000210377 1375 ntBASIC4.2□□□□□ -1.74
Traf1P39428 Gm44708-201ENSMUST00000205580 2237 ntBASIC4.2□□□□□ -1.74
Traf1P39428 Gm24096-201ENSMUST00000103905 110 ntBASIC4.2□□□□□ -1.74
Traf1P39428 Gm25317-201ENSMUST00000116824 129 ntBASIC4.2□□□□□ -1.74
Traf1P39428 Gm14898-201ENSMUST00000120202 645 ntBASIC4.2□□□□□ -1.74
Traf1P39428 Gm12603-202ENSMUST00000146678 618 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
Traf1P39428 Gm15875-201ENSMUST00000152264 273 ntTSL 3 BASIC4.2□□□□□ -1.74
Traf1P39428 Gm22380-201ENSMUST00000157479 95 ntBASIC4.2□□□□□ -1.74
Traf1P39428 Gm24060-201ENSMUST00000157494 95 ntBASIC4.2□□□□□ -1.74
Traf1P39428 Mir1934-201ENSMUST00000158127 83 ntBASIC4.2□□□□□ -1.74
Traf1P39428 Gm8653-201ENSMUST00000163096 924 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
Traf1P39428 Gm6164-201ENSMUST00000169774 924 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
Traf1P39428 Gm21732-201ENSMUST00000179309 1083 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
Traf1P39428 Gm21773-201ENSMUST00000179355 1083 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
Retrieved 100 of 76,532 protein–RNA pairs in 79.7 ms