Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Gm43975-201ENSMUST00000203023 481 ntBASIC4.02□□□□□ -1.77
ShhQ62226 Gm44879-201ENSMUST00000207007 503 ntBASIC4.02□□□□□ -1.77
ShhQ62226 Ifitm6-202ENSMUST00000209328 678 ntAPPRIS P2 TSL 5 BASIC4.02□□□□□ -1.77
ShhQ62226 Arl2bp-203ENSMUST00000211858 318 ntTSL 5 BASIC4.02□□□□□ -1.77
ShhQ62226 AC160123.1-201ENSMUST00000213443 570 ntTSL 5 BASIC4.02□□□□□ -1.77
ShhQ62226 Olfr946-ps1-201ENSMUST00000217547 341 ntBASIC4.02□□□□□ -1.77
ShhQ62226 AC154313.1-201ENSMUST00000217755 3841 ntBASIC4.02□□□□□ -1.77
ShhQ62226 Gm46190-201ENSMUST00000219650 427 ntBASIC4.02□□□□□ -1.77
ShhQ62226 AC159629.1-201ENSMUST00000220698 568 ntTSL 2 BASIC4.02□□□□□ -1.77
ShhQ62226 CT030170.6-201ENSMUST00000221149 550 ntTSL 5 BASIC4.02□□□□□ -1.77
ShhQ62226 Gm46998-201ENSMUST00000221444 330 ntBASIC4.02□□□□□ -1.77
ShhQ62226 AC174797.3-202ENSMUST00000224578 587 ntBASIC4.02□□□□□ -1.77
ShhQ62226 AC158142.1-201ENSMUST00000226721 416 ntBASIC4.02□□□□□ -1.77
ShhQ62226 AC154270.1-201ENSMUST00000227226 426 ntBASIC4.02□□□□□ -1.77
ShhQ62226 AC147628.1-201ENSMUST00000228193 688 ntBASIC4.02□□□□□ -1.77
ShhQ62226 Fabp9-201ENSMUST00000029038 583 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
ShhQ62226 Olfr1031-201ENSMUST00000050942 1011 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
ShhQ62226 Olfr944-201ENSMUST00000079650 936 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
ShhQ62226 Olfr1164-201ENSMUST00000099834 1112 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
ShhQ62226 Olfr107-205ENSMUST00000216844 4021 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
ShhQ62226 Vmn2r-ps5-201ENSMUST00000175971 2730 ntBASIC4.02□□□□□ -1.77
ShhQ62226 Gm29515-201ENSMUST00000188273 2077 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
ShhQ62226 Gm45211-201ENSMUST00000206208 2650 ntBASIC4.02□□□□□ -1.77
ShhQ62226 Gm13630-201ENSMUST00000127849 3650 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
ShhQ62226 Spp1-202ENSMUST00000086833 1411 ntAPPRIS ALT2 TSL 5 BASIC4.02□□□□□ -1.77
ShhQ62226 Vmn2r46-201ENSMUST00000171523 2430 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
ShhQ62226 Vmn1r81-205ENSMUST00000228764 13763 ntAPPRIS P2 BASIC4.02□□□□□ -1.77
ShhQ62226 Vmn2r21-201ENSMUST00000163607 2562 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
ShhQ62226 Vmn2r20-201ENSMUST00000172199 2562 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
ShhQ62226 Gm42946-201ENSMUST00000196108 2570 ntBASIC4.02□□□□□ -1.77
ShhQ62226 Cd28-201ENSMUST00000027165 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
ShhQ62226 AC135119.1-201ENSMUST00000227935 3717 ntBASIC4.01□□□□□ -1.77
ShhQ62226 Olfr1316-202ENSMUST00000213696 4184 ntAPPRIS ALT1 TSL 5 BASIC4.01□□□□□ -1.77
ShhQ62226 Sult6b1-204ENSMUST00000169544 2060 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
ShhQ62226 Gm37053-201ENSMUST00000192399 2087 ntBASIC4.01□□□□□ -1.77
ShhQ62226 Olfr1079-203ENSMUST00000216480 2071 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
ShhQ62226 Olr1-201ENSMUST00000032265 3572 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
ShhQ62226 Ptprz1-201ENSMUST00000090568 8068 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
ShhQ62226 Vmn1r80-204ENSMUST00000227471 6368 ntBASIC4.01□□□□□ -1.77
ShhQ62226 Nlrp4e-201ENSMUST00000076470 3382 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
ShhQ62226 Olfr872-201ENSMUST00000086474 1897 ntAPPRIS P1 TSL 2 BASIC4.01□□□□□ -1.77
ShhQ62226 Zfp131-202ENSMUST00000178271 2966 ntAPPRIS P3 TSL 1 (best) BASIC4.01□□□□□ -1.77
ShhQ62226 Dync2h1-206ENSMUST00000147193 13103 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
ShhQ62226 Olfr1058-201ENSMUST00000102631 951 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
ShhQ62226 Fam122c-201ENSMUST00000114835 745 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
ShhQ62226 Gm13614-201ENSMUST00000117306 503 ntBASIC4.01□□□□□ -1.77
ShhQ62226 Gm11673-201ENSMUST00000117846 331 ntBASIC4.01□□□□□ -1.77
ShhQ62226 Gm12571-201ENSMUST00000118132 243 ntBASIC4.01□□□□□ -1.77
ShhQ62226 Gm15060-201ENSMUST00000119550 948 ntBASIC4.01□□□□□ -1.77
ShhQ62226 Gm15014-201ENSMUST00000120742 258 ntBASIC4.01□□□□□ -1.77
ShhQ62226 Gm23118-201ENSMUST00000122657 187 ntBASIC4.01□□□□□ -1.77
ShhQ62226 Gm25806-201ENSMUST00000122782 122 ntBASIC4.01□□□□□ -1.77
ShhQ62226 Gm10059-201ENSMUST00000131139 171 ntBASIC4.01□□□□□ -1.77
ShhQ62226 Gm16331-201ENSMUST00000144274 498 ntBASIC4.01□□□□□ -1.77
ShhQ62226 Gm2343-201ENSMUST00000161177 1042 ntBASIC4.01□□□□□ -1.77
ShhQ62226 Mir3112-201ENSMUST00000175431 82 ntBASIC4.01□□□□□ -1.77
ShhQ62226 Gm21828-201ENSMUST00000178050 543 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
ShhQ62226 Gm22166-201ENSMUST00000178419 121 ntBASIC4.01□□□□□ -1.77
ShhQ62226 Gm21866-201ENSMUST00000178428 543 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
ShhQ62226 Gm21725-201ENSMUST00000178519 543 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
ShhQ62226 Gm21800-201ENSMUST00000178559 543 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
ShhQ62226 Gm21852-201ENSMUST00000179125 543 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
ShhQ62226 Gm23288-201ENSMUST00000179213 121 ntBASIC4.01□□□□□ -1.77
ShhQ62226 Gm21764-201ENSMUST00000179219 543 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
ShhQ62226 Gm21891-201ENSMUST00000179284 543 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
ShhQ62226 Gm23860-201ENSMUST00000179446 132 ntBASIC4.01□□□□□ -1.77
ShhQ62226 Gm21904-201ENSMUST00000179522 543 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
ShhQ62226 Ranbp2-ps8-201ENSMUST00000183723 345 ntBASIC4.01□□□□□ -1.77
ShhQ62226 Gm7654-201ENSMUST00000186738 683 ntBASIC4.01□□□□□ -1.77
ShhQ62226 Gm28830-201ENSMUST00000188192 213 ntBASIC4.01□□□□□ -1.77
ShhQ62226 1700027A15Rik-203ENSMUST00000188793 423 ntTSL 3 BASIC4.01□□□□□ -1.77
ShhQ62226 Gm17953-201ENSMUST00000192061 667 ntBASIC4.01□□□□□ -1.77
ShhQ62226 Igkv8-31-201ENSMUST00000200040 372 ntBASIC4.01□□□□□ -1.77
ShhQ62226 Gm44389-201ENSMUST00000203795 182 ntBASIC4.01□□□□□ -1.77
ShhQ62226 Nasp-ps1-201ENSMUST00000205050 691 ntBASIC4.01□□□□□ -1.77
ShhQ62226 Gm45048-201ENSMUST00000207058 429 ntBASIC4.01□□□□□ -1.77
ShhQ62226 Olfr941-ps1-201ENSMUST00000215258 935 ntBASIC4.01□□□□□ -1.77
ShhQ62226 CT010455.1-201ENSMUST00000218579 413 ntBASIC4.01□□□□□ -1.77
ShhQ62226 AC134468.1-201ENSMUST00000220869 299 ntTSL 5 BASIC4.01□□□□□ -1.77
ShhQ62226 AC119241.1-201ENSMUST00000223651 534 ntBASIC4.01□□□□□ -1.77
ShhQ62226 AC126253.2-201ENSMUST00000226518 205 ntBASIC4.01□□□□□ -1.77
ShhQ62226 Gm16261-201ENSMUST00000096813 205 ntBASIC4.01□□□□□ -1.77
ShhQ62226 Vmn1r43-205ENSMUST00000228709 12646 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
ShhQ62226 Gm38057-201ENSMUST00000195551 3203 ntBASIC4.01□□□□□ -1.77
ShhQ62226 A230057D06Rik-203ENSMUST00000208953 3357 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
ShhQ62226 Olfr235-206ENSMUST00000215407 2633 ntAPPRIS P1 TSL 5 BASIC4.01□□□□□ -1.77
ShhQ62226 Trim30b-205ENSMUST00000171830 2771 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
ShhQ62226 Gm44283-201ENSMUST00000204461 3950 ntBASIC4.01□□□□□ -1.77
ShhQ62226 Kcnb2-201ENSMUST00000170146 14845 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
ShhQ62226 Pih1h3b-201ENSMUST00000044806 1509 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
ShhQ62226 Glra3-201ENSMUST00000000275 6508 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
ShhQ62226 Cyp3a11-201ENSMUST00000035918 2344 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
ShhQ62226 Adam26b-201ENSMUST00000080135 2476 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
ShhQ62226 Gm9921-201ENSMUST00000173293 4399 ntTSL 1 (best) BASIC4□□□□□ -1.77
ShhQ62226 Snora64-201ENSMUST00000104521 134 ntBASIC4□□□□□ -1.77
ShhQ62226 Olfr483-201ENSMUST00000104917 1065 ntAPPRIS P1 BASIC4□□□□□ -1.77
ShhQ62226 Gm23987-201ENSMUST00000117039 129 ntBASIC4□□□□□ -1.77
ShhQ62226 Gm13785-201ENSMUST00000119099 690 ntBASIC4□□□□□ -1.77
ShhQ62226 Gm12379-201ENSMUST00000119607 391 ntBASIC4□□□□□ -1.77
ShhQ62226 Gm11522-201ENSMUST00000120533 176 ntBASIC4□□□□□ -1.77
Retrieved 100 of 76,532 protein–RNA pairs in 80 ms