Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Cd200r3-209ENSMUST00000166731 3876 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Gm11782-201ENSMUST00000131675 2804 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Postn-203ENSMUST00000107985 3205 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Gm45389-201ENSMUST00000211163 3399 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Gm38073-201ENSMUST00000195141 3665 ntBASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Igkv1-135-201ENSMUST00000103303 394 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Gm15108-201ENSMUST00000116160 803 ntBASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Gm14943-201ENSMUST00000118056 546 ntBASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Gm14833-201ENSMUST00000118345 1027 ntBASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Gm13640-201ENSMUST00000118445 264 ntBASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Gm12495-201ENSMUST00000119750 447 ntBASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Gm16017-201ENSMUST00000119834 208 ntBASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Gm11876-201ENSMUST00000120002 269 ntBASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Gm12578-201ENSMUST00000121244 417 ntBASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Gm12858-201ENSMUST00000121913 208 ntBASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Gm8080-201ENSMUST00000122046 1155 ntBASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Gm25104-201ENSMUST00000122476 163 ntBASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Gm22960-201ENSMUST00000122517 104 ntBASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Gm12195-201ENSMUST00000144990 469 ntTSL 3 BASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Gm16250-201ENSMUST00000148974 256 ntBASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Gm22637-201ENSMUST00000158144 283 ntBASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Gm1992-201ENSMUST00000161581 250 ntTSL 3 BASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Bhlhe40-202ENSMUST00000163617 476 ntTSL 2 BASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Gm2930-201ENSMUST00000170403 474 ntBASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Gm19203-201ENSMUST00000174049 939 ntBASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Mir5127-201ENSMUST00000175295 71 ntBASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Gm8247-202ENSMUST00000178759 375 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Gm27233-201ENSMUST00000184030 307 ntBASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Gm28643-201ENSMUST00000188811 356 ntTSL 5 BASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Gm28956-201ENSMUST00000189047 427 ntBASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Igkv13-61-1-201ENSMUST00000198255 296 ntBASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Gm43198-201ENSMUST00000200927 326 ntBASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Gm39232-201ENSMUST00000210760 1012 ntTSL 5 BASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Gm45829-201ENSMUST00000212466 334 ntTSL 5 BASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Gm30674-201ENSMUST00000214523 392 ntBASIC3.41□□□□□ -1.86
Trim40Q3UWA4 AC139376.1-201ENSMUST00000220056 1250 ntBASIC3.41□□□□□ -1.86
Trim40Q3UWA4 AC154552.5-201ENSMUST00000222352 207 ntBASIC3.41□□□□□ -1.86
Trim40Q3UWA4 AC154640.2-201ENSMUST00000226324 472 ntBASIC3.41□□□□□ -1.86
Trim40Q3UWA4 AC168062.2-201ENSMUST00000228907 422 ntBASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Ly96-201ENSMUST00000026881 632 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Scrg1-201ENSMUST00000034023 700 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Olfr1031-201ENSMUST00000050942 1011 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Olfr1201-201ENSMUST00000073458 924 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Olfr727-201ENSMUST00000079142 1035 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Mir134-201ENSMUST00000083492 71 ntBASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Olfr172-201ENSMUST00000095991 1089 ntAPPRIS P1 BASIC3.41□□□□□ -1.86
Trim40Q3UWA4 D930036K23Rik-201ENSMUST00000191894 3964 ntBASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Gm15319-201ENSMUST00000084046 2522 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Gm45540-201ENSMUST00000209271 3606 ntBASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Gm12022-201ENSMUST00000143311 1340 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Gm44527-202ENSMUST00000204519 1314 ntBASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Zfp85-202ENSMUST00000144183 2312 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
Trim40Q3UWA4 Lrrd1-201ENSMUST00000044039 2951 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.86
Trim40Q3UWA4 Gm4724-201ENSMUST00000109045 1659 ntAPPRIS P1 TSL 2 BASIC3.4□□□□□ -1.86
Trim40Q3UWA4 Prlr-202ENSMUST00000124470 9900 ntAPPRIS P3 TSL 1 (best) BASIC3.4□□□□□ -1.87
Trim40Q3UWA4 Gm15854-201ENSMUST00000118879 808 ntBASIC3.4□□□□□ -1.87
Trim40Q3UWA4 4930555B12Rik-201ENSMUST00000135444 283 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
Trim40Q3UWA4 1810065E05Rik-201ENSMUST00000013797 926 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
Trim40Q3UWA4 Gm16212-202ENSMUST00000143555 420 ntTSL 3 BASIC3.4□□□□□ -1.87
Trim40Q3UWA4 Gm14696-201ENSMUST00000144294 3976 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
Trim40Q3UWA4 Gm22794-201ENSMUST00000157228 306 ntBASIC3.4□□□□□ -1.87
Trim40Q3UWA4 Gm25913-201ENSMUST00000157617 135 ntBASIC3.4□□□□□ -1.87
Trim40Q3UWA4 Gm23583-201ENSMUST00000158533 289 ntBASIC3.4□□□□□ -1.87
Trim40Q3UWA4 Gm6374-201ENSMUST00000159051 788 ntBASIC3.4□□□□□ -1.87
Trim40Q3UWA4 Vmn1r-ps34-201ENSMUST00000174046 943 ntBASIC3.4□□□□□ -1.87
Trim40Q3UWA4 Mir3090-201ENSMUST00000175597 87 ntBASIC3.4□□□□□ -1.87
Trim40Q3UWA4 Trdv1-202ENSMUST00000187163 334 ntAPPRIS ALT2 BASIC3.4□□□□□ -1.87
Trim40Q3UWA4 1700010J16Rik-202ENSMUST00000189116 890 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
Trim40Q3UWA4 Gm28986-201ENSMUST00000189682 678 ntTSL 5 BASIC3.4□□□□□ -1.87
Trim40Q3UWA4 Rhoay-ps1-201ENSMUST00000191243 581 ntBASIC3.4□□□□□ -1.87
Trim40Q3UWA4 Gm37059-201ENSMUST00000191723 678 ntTSL 5 BASIC3.4□□□□□ -1.87
Trim40Q3UWA4 Gm38061-201ENSMUST00000192490 365 ntBASIC3.4□□□□□ -1.87
Trim40Q3UWA4 Gm38329-201ENSMUST00000193473 427 ntBASIC3.4□□□□□ -1.87
Trim40Q3UWA4 Gm37209-201ENSMUST00000194109 1276 ntBASIC3.4□□□□□ -1.87
Trim40Q3UWA4 Amd-ps5-201ENSMUST00000198406 989 ntBASIC3.4□□□□□ -1.87
Trim40Q3UWA4 Gm43645-201ENSMUST00000200129 341 ntTSL 2 BASIC3.4□□□□□ -1.87
Trim40Q3UWA4 Gm34091-201ENSMUST00000200875 604 ntBASIC3.4□□□□□ -1.87
Trim40Q3UWA4 Gm19244-201ENSMUST00000204340 253 ntBASIC3.4□□□□□ -1.87
Trim40Q3UWA4 Gm6240-201ENSMUST00000208014 473 ntBASIC3.4□□□□□ -1.87
Trim40Q3UWA4 Gm17766-201ENSMUST00000209223 442 ntBASIC3.4□□□□□ -1.87
Trim40Q3UWA4 AC134537.3-201ENSMUST00000220154 503 ntTSL 3 BASIC3.4□□□□□ -1.87
Trim40Q3UWA4 AC120540.1-201ENSMUST00000221879 324 ntBASIC3.4□□□□□ -1.87
Trim40Q3UWA4 Gm9628-201ENSMUST00000222169 725 ntBASIC3.4□□□□□ -1.87
Trim40Q3UWA4 Vmn1r89-206ENSMUST00000227319 985 ntBASIC3.4□□□□□ -1.87
Trim40Q3UWA4 AC137902.2-201ENSMUST00000227989 576 ntBASIC3.4□□□□□ -1.87
Trim40Q3UWA4 Tshb-201ENSMUST00000029450 605 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.87
Trim40Q3UWA4 Vmn1r12-201ENSMUST00000073384 924 ntAPPRIS P2 BASIC3.4□□□□□ -1.87
Trim40Q3UWA4 Rpl21-ps4-201ENSMUST00000080237 438 ntBASIC3.4□□□□□ -1.87
Trim40Q3UWA4 Gm25582-201ENSMUST00000083412 110 ntBASIC3.4□□□□□ -1.87
Trim40Q3UWA4 Vmn1r194-201ENSMUST00000091737 891 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
Trim40Q3UWA4 Olfr1256-201ENSMUST00000099763 921 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
Trim40Q3UWA4 Olfr1216-202ENSMUST00000216000 3595 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.87
Trim40Q3UWA4 Vmn2r-ps47-201ENSMUST00000174515 2557 ntBASIC3.4□□□□□ -1.87
Trim40Q3UWA4 C130023A14Rik-201ENSMUST00000193537 3087 ntBASIC3.4□□□□□ -1.87
Trim40Q3UWA4 Gm21034-201ENSMUST00000207390 2608 ntBASIC3.4□□□□□ -1.87
Trim40Q3UWA4 Gm21035-201ENSMUST00000207867 2608 ntBASIC3.4□□□□□ -1.87
Trim40Q3UWA4 Gm29674-202ENSMUST00000219664 4083 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
Trim40Q3UWA4 Lztfl1-201ENSMUST00000026274 4070 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
Trim40Q3UWA4 Trdn-208ENSMUST00000219982 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.39□□□□□ -1.87
Trim40Q3UWA4 Gm18913-201ENSMUST00000204311 1789 ntBASIC3.39□□□□□ -1.87
Retrieved 100 of 76,532 protein–RNA pairs in 76.8 ms