Protein–RNA interactions for Protein: Q9R060

Nubp1, Cytosolic Fe-S cluster assembly factor NUBP1, mousemouse

Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nubp1Q9R060 Gm11355-201ENSMUST00000121120 306 ntBASIC15.11■□□□□ 0.01
Nubp1Q9R060 Gm14964-202ENSMUST00000149574 716 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Nubp1Q9R060 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC15.11■□□□□ 0.01
Nubp1Q9R060 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
Nubp1Q9R060 Krtcap3-201ENSMUST00000054829 904 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nubp1Q9R060 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nubp1Q9R060 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
Nubp1Q9R060 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nubp1Q9R060 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nubp1Q9R060 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nubp1Q9R060 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
Nubp1Q9R060 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nubp1Q9R060 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
Nubp1Q9R060 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
Nubp1Q9R060 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nubp1Q9R060 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nubp1Q9R060 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC15.1■□□□□ 0.01
Nubp1Q9R060 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
Nubp1Q9R060 Gm6627-201ENSMUST00000218299 2386 ntBASIC15.1■□□□□ 0.01
Nubp1Q9R060 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nubp1Q9R060 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nubp1Q9R060 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Nubp1Q9R060 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Nubp1Q9R060 Gm37592-201ENSMUST00000192741 373 ntTSL 5 BASIC15.1■□□□□ 0.01
Nubp1Q9R060 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC15.1■□□□□ 0.01
Nubp1Q9R060 Gm18515-201ENSMUST00000219755 797 ntBASIC15.1■□□□□ 0.01
Nubp1Q9R060 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nubp1Q9R060 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
Nubp1Q9R060 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nubp1Q9R060 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nubp1Q9R060 Tmem145-202ENSMUST00000119703 1781 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Nubp1Q9R060 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
Nubp1Q9R060 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nubp1Q9R060 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
Nubp1Q9R060 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
Nubp1Q9R060 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nubp1Q9R060 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
Nubp1Q9R060 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
Nubp1Q9R060 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nubp1Q9R060 Frrs1l-201ENSMUST00000053681 6817 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nubp1Q9R060 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Nubp1Q9R060 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nubp1Q9R060 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nubp1Q9R060 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Nubp1Q9R060 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nubp1Q9R060 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Nubp1Q9R060 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nubp1Q9R060 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nubp1Q9R060 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nubp1Q9R060 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nubp1Q9R060 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC15.09■□□□□ 0.01
Nubp1Q9R060 Il4-203ENSMUST00000140684 530 ntTSL 2 BASIC15.09■□□□□ 0.01
Nubp1Q9R060 Il4-204ENSMUST00000150568 605 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Nubp1Q9R060 Mir3081-201ENSMUST00000175305 84 ntBASIC15.09■□□□□ 0.01
Nubp1Q9R060 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
Nubp1Q9R060 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nubp1Q9R060 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nubp1Q9R060 Il4-201ENSMUST00000000889 590 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nubp1Q9R060 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
Nubp1Q9R060 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC15.09■□□□□ 0.01
Nubp1Q9R060 Itsn1-201ENSMUST00000056482 5364 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
Nubp1Q9R060 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
Nubp1Q9R060 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Nubp1Q9R060 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Nubp1Q9R060 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0
Nubp1Q9R060 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
Nubp1Q9R060 Hnrnph3-203ENSMUST00000119814 682 ntTSL 1 (best) BASIC15.08■□□□□ 0
Nubp1Q9R060 Gm12963-201ENSMUST00000131846 783 ntTSL 5 BASIC15.08■□□□□ 0
Nubp1Q9R060 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Nubp1Q9R060 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC15.08■□□□□ 0
Nubp1Q9R060 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC15.08■□□□□ 0
Nubp1Q9R060 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC15.08■□□□□ 0
Nubp1Q9R060 Gm18115-201ENSMUST00000221209 621 ntBASIC15.08■□□□□ 0
Nubp1Q9R060 Lce1a2-201ENSMUST00000029530 715 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Nubp1Q9R060 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC15.08■□□□□ 0
Nubp1Q9R060 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Nubp1Q9R060 AC154849.3-201ENSMUST00000223733 1660 ntBASIC15.08■□□□□ 0
Nubp1Q9R060 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Nubp1Q9R060 Plxnd1-201ENSMUST00000015511 6907 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Nubp1Q9R060 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC15.08■□□□□ 0
Nubp1Q9R060 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Nubp1Q9R060 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
Nubp1Q9R060 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC15.08■□□□□ 0
Nubp1Q9R060 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC15.08■□□□□ 0
Nubp1Q9R060 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
Nubp1Q9R060 Bcl7b-203ENSMUST00000111188 1434 ntAPPRIS ALT1 TSL 5 BASIC15.08■□□□□ 0
Nubp1Q9R060 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC15.08■□□□□ 0
Nubp1Q9R060 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC15.08■□□□□ 0
Nubp1Q9R060 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC15.08■□□□□ 0
Nubp1Q9R060 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC15.08■□□□□ 0
Nubp1Q9R060 Gpr137b-ps-203ENSMUST00000220758 1942 ntTSL 1 (best) BASIC15.07■□□□□ 0
Nubp1Q9R060 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC15.07■□□□□ 0
Nubp1Q9R060 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
Nubp1Q9R060 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
Nubp1Q9R060 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC15.07■□□□□ 0
Nubp1Q9R060 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC15.07■□□□□ 0
Nubp1Q9R060 Gm29103-201ENSMUST00000191034 598 ntTSL 5 BASIC15.07■□□□□ 0
Nubp1Q9R060 Gm44044-201ENSMUST00000205178 1089 ntBASIC15.07■□□□□ 0
Nubp1Q9R060 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
Nubp1Q9R060 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms