Protein–RNA interactions for Protein: Q9JKE1

Trem3, TREM-3, mousemouse

Predictions only

Length 183 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trem3Q9JKE1 Gm37820-201ENSMUST00000194021 2147 ntBASIC14.02□□□□□ -0.16
Trem3Q9JKE1 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Trem3Q9JKE1 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Trem3Q9JKE1 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Trem3Q9JKE1 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC14.02□□□□□ -0.16
Trem3Q9JKE1 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Trem3Q9JKE1 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC14.02□□□□□ -0.17
Trem3Q9JKE1 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC14.02□□□□□ -0.17
Trem3Q9JKE1 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Trem3Q9JKE1 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trem3Q9JKE1 Tcap-201ENSMUST00000008021 948 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trem3Q9JKE1 Gm5874-201ENSMUST00000096101 508 ntBASIC14.02□□□□□ -0.17
Trem3Q9JKE1 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trem3Q9JKE1 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Trem3Q9JKE1 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Trem3Q9JKE1 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Trem3Q9JKE1 Nfib-205ENSMUST00000107247 3267 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Trem3Q9JKE1 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trem3Q9JKE1 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trem3Q9JKE1 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trem3Q9JKE1 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trem3Q9JKE1 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trem3Q9JKE1 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trem3Q9JKE1 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Trem3Q9JKE1 Wnt16-203ENSMUST00000148639 1168 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Trem3Q9JKE1 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC14.01□□□□□ -0.17
Trem3Q9JKE1 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trem3Q9JKE1 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC14.01□□□□□ -0.17
Trem3Q9JKE1 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Trem3Q9JKE1 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
Trem3Q9JKE1 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Trem3Q9JKE1 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trem3Q9JKE1 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trem3Q9JKE1 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Trem3Q9JKE1 Gm43272-201ENSMUST00000200599 1584 ntBASIC14□□□□□ -0.17
Trem3Q9JKE1 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trem3Q9JKE1 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trem3Q9JKE1 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trem3Q9JKE1 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trem3Q9JKE1 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trem3Q9JKE1 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trem3Q9JKE1 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trem3Q9JKE1 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trem3Q9JKE1 Pten-201ENSMUST00000013807 8292 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trem3Q9JKE1 Gm7290-201ENSMUST00000104990 617 ntBASIC14□□□□□ -0.17
Trem3Q9JKE1 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trem3Q9JKE1 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC14□□□□□ -0.17
Trem3Q9JKE1 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trem3Q9JKE1 Gm12918-201ENSMUST00000120234 636 ntBASIC14□□□□□ -0.17
Trem3Q9JKE1 Gm15710-201ENSMUST00000121821 636 ntBASIC14□□□□□ -0.17
Trem3Q9JKE1 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC14□□□□□ -0.17
Trem3Q9JKE1 Yjefn3-203ENSMUST00000180068 629 ntTSL 5 BASIC14□□□□□ -0.17
Trem3Q9JKE1 Gm5075-201ENSMUST00000196916 622 ntBASIC14□□□□□ -0.17
Trem3Q9JKE1 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trem3Q9JKE1 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC14□□□□□ -0.17
Trem3Q9JKE1 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC14□□□□□ -0.17
Trem3Q9JKE1 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Trem3Q9JKE1 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trem3Q9JKE1 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trem3Q9JKE1 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trem3Q9JKE1 Gm45774-201ENSMUST00000211992 2665 ntBASIC14□□□□□ -0.17
Trem3Q9JKE1 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trem3Q9JKE1 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Trem3Q9JKE1 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
Trem3Q9JKE1 Gm16401-202ENSMUST00000197463 2074 ntBASIC14□□□□□ -0.17
Trem3Q9JKE1 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trem3Q9JKE1 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trem3Q9JKE1 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Trem3Q9JKE1 Foxq1-201ENSMUST00000042118 4843 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
Trem3Q9JKE1 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
Trem3Q9JKE1 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trem3Q9JKE1 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trem3Q9JKE1 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trem3Q9JKE1 Zic1-202ENSMUST00000065360 2811 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trem3Q9JKE1 Gm6211-202ENSMUST00000167849 925 ntBASIC13.99□□□□□ -0.17
Trem3Q9JKE1 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
Trem3Q9JKE1 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trem3Q9JKE1 Wnt10b-205ENSMUST00000226846 1204 ntBASIC13.99□□□□□ -0.17
Trem3Q9JKE1 Zmynd15-203ENSMUST00000108563 2649 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trem3Q9JKE1 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC13.99□□□□□ -0.17
Trem3Q9JKE1 Cnksr2-201ENSMUST00000026750 5738 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trem3Q9JKE1 Fmr1-205ENSMUST00000114656 4257 ntTSL 5 BASIC13.99□□□□□ -0.17
Trem3Q9JKE1 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
Trem3Q9JKE1 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trem3Q9JKE1 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trem3Q9JKE1 Gtpbp3-208ENSMUST00000168847 2803 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
Trem3Q9JKE1 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trem3Q9JKE1 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC13.99□□□□□ -0.17
Trem3Q9JKE1 Flg-201ENSMUST00000050758 1488 ntBASIC13.99□□□□□ -0.17
Trem3Q9JKE1 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trem3Q9JKE1 Sh3rf3-205ENSMUST00000153031 5682 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Trem3Q9JKE1 Mlxip-202ENSMUST00000111596 2653 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Trem3Q9JKE1 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Trem3Q9JKE1 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
Trem3Q9JKE1 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC13.98□□□□□ -0.17
Trem3Q9JKE1 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
Trem3Q9JKE1 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC13.98□□□□□ -0.17
Trem3Q9JKE1 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC13.98□□□□□ -0.17
Trem3Q9JKE1 Tasp1-201ENSMUST00000046656 2480 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Trem3Q9JKE1 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms