Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lima1Q9ERG0 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Lima1Q9ERG0 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Lima1Q9ERG0 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Lima1Q9ERG0 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lima1Q9ERG0 Tm2d3-202ENSMUST00000065574 1478 ntAPPRIS P4 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lima1Q9ERG0 Il17rb-202ENSMUST00000122205 2094 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Lima1Q9ERG0 Gm16401-202ENSMUST00000197463 2074 ntBASIC17.11■□□□□ 0.33
Lima1Q9ERG0 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lima1Q9ERG0 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lima1Q9ERG0 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lima1Q9ERG0 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Lima1Q9ERG0 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC17.11■□□□□ 0.33
Lima1Q9ERG0 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lima1Q9ERG0 Fbxl12os-202ENSMUST00000136376 2349 ntTSL 2 BASIC17.1■□□□□ 0.33
Lima1Q9ERG0 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lima1Q9ERG0 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lima1Q9ERG0 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lima1Q9ERG0 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lima1Q9ERG0 Avl9-201ENSMUST00000031805 6670 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lima1Q9ERG0 Zic3-202ENSMUST00000088629 1951 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Lima1Q9ERG0 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lima1Q9ERG0 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lima1Q9ERG0 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Lima1Q9ERG0 Gm12933-201ENSMUST00000120203 872 ntBASIC17.1■□□□□ 0.33
Lima1Q9ERG0 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Lima1Q9ERG0 Mir5133-201ENSMUST00000174955 77 ntBASIC17.1■□□□□ 0.33
Lima1Q9ERG0 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC17.1■□□□□ 0.33
Lima1Q9ERG0 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lima1Q9ERG0 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lima1Q9ERG0 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lima1Q9ERG0 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lima1Q9ERG0 P2ry1-203ENSMUST00000193943 2203 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Lima1Q9ERG0 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lima1Q9ERG0 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lima1Q9ERG0 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Lima1Q9ERG0 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Lima1Q9ERG0 Tbc1d9b-202ENSMUST00000101270 5213 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Lima1Q9ERG0 Mex3a-201ENSMUST00000172699 5778 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Lima1Q9ERG0 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC17.09■□□□□ 0.33
Lima1Q9ERG0 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Lima1Q9ERG0 AC164629.5-201ENSMUST00000220387 632 ntBASIC17.09■□□□□ 0.33
Lima1Q9ERG0 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Lima1Q9ERG0 Sept8-203ENSMUST00000120878 1806 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
Lima1Q9ERG0 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Lima1Q9ERG0 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Lima1Q9ERG0 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Lima1Q9ERG0 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Lima1Q9ERG0 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Lima1Q9ERG0 Rgl2-201ENSMUST00000047503 3252 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Lima1Q9ERG0 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Lima1Q9ERG0 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.33
Lima1Q9ERG0 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC17.08■□□□□ 0.33
Lima1Q9ERG0 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Lima1Q9ERG0 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
Lima1Q9ERG0 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC17.08■□□□□ 0.33
Lima1Q9ERG0 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Lima1Q9ERG0 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Lima1Q9ERG0 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Lima1Q9ERG0 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Lima1Q9ERG0 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
Lima1Q9ERG0 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC17.08■□□□□ 0.32
Lima1Q9ERG0 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Lima1Q9ERG0 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Lima1Q9ERG0 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Lima1Q9ERG0 Prdm11-201ENSMUST00000111272 3012 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Lima1Q9ERG0 Gm26596-201ENSMUST00000180464 2655 ntBASIC17.08■□□□□ 0.32
Lima1Q9ERG0 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Lima1Q9ERG0 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Lima1Q9ERG0 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Lima1Q9ERG0 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Lima1Q9ERG0 Gm42918-201ENSMUST00000199249 1580 ntBASIC17.07■□□□□ 0.32
Lima1Q9ERG0 Chka-202ENSMUST00000072055 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lima1Q9ERG0 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lima1Q9ERG0 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lima1Q9ERG0 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lima1Q9ERG0 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lima1Q9ERG0 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
Lima1Q9ERG0 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lima1Q9ERG0 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC17.07■□□□□ 0.32
Lima1Q9ERG0 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC17.07■□□□□ 0.32
Lima1Q9ERG0 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC17.07■□□□□ 0.32
Lima1Q9ERG0 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Lima1Q9ERG0 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lima1Q9ERG0 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lima1Q9ERG0 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lima1Q9ERG0 9930012K11Rik-205ENSMUST00000153871 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lima1Q9ERG0 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lima1Q9ERG0 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
Lima1Q9ERG0 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Lima1Q9ERG0 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Lima1Q9ERG0 A130014A01Rik-201ENSMUST00000183021 2323 ntBASIC17.07■□□□□ 0.32
Lima1Q9ERG0 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Lima1Q9ERG0 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC17.06■□□□□ 0.32
Lima1Q9ERG0 Mapk1-202ENSMUST00000069107 5099 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lima1Q9ERG0 Epha10-201ENSMUST00000059343 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lima1Q9ERG0 AC125311.2-201ENSMUST00000227477 1940 ntBASIC17.06■□□□□ 0.32
Lima1Q9ERG0 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lima1Q9ERG0 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Lima1Q9ERG0 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 58.9 ms