Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Vps28Q9D1C8 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Vps28Q9D1C8 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Vps28Q9D1C8 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Vps28Q9D1C8 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Vps28Q9D1C8 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC17.75■□□□□ 0.43
Vps28Q9D1C8 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC17.75■□□□□ 0.43
Vps28Q9D1C8 Mir9-3hg-206ENSMUST00000182937 636 ntTSL 3 BASIC17.75■□□□□ 0.43
Vps28Q9D1C8 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Vps28Q9D1C8 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Vps28Q9D1C8 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Vps28Q9D1C8 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Vps28Q9D1C8 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Vps28Q9D1C8 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Vps28Q9D1C8 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Vps28Q9D1C8 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Vps28Q9D1C8 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC17.74■□□□□ 0.43
Vps28Q9D1C8 Ppp1r3f-205ENSMUST00000150787 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Vps28Q9D1C8 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Vps28Q9D1C8 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC17.74■□□□□ 0.43
Vps28Q9D1C8 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Vps28Q9D1C8 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Vps28Q9D1C8 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Vps28Q9D1C8 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
Vps28Q9D1C8 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC17.74■□□□□ 0.43
Vps28Q9D1C8 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
Vps28Q9D1C8 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Vps28Q9D1C8 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps28Q9D1C8 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps28Q9D1C8 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps28Q9D1C8 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Vps28Q9D1C8 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps28Q9D1C8 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps28Q9D1C8 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
Vps28Q9D1C8 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps28Q9D1C8 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps28Q9D1C8 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC17.73■□□□□ 0.43
Vps28Q9D1C8 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Vps28Q9D1C8 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Vps28Q9D1C8 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps28Q9D1C8 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Vps28Q9D1C8 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC17.73■□□□□ 0.43
Vps28Q9D1C8 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps28Q9D1C8 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC17.73■□□□□ 0.43
Vps28Q9D1C8 Map3k5-201ENSMUST00000095806 5450 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps28Q9D1C8 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps28Q9D1C8 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Vps28Q9D1C8 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Vps28Q9D1C8 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps28Q9D1C8 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps28Q9D1C8 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps28Q9D1C8 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
Vps28Q9D1C8 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps28Q9D1C8 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC17.72■□□□□ 0.43
Vps28Q9D1C8 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps28Q9D1C8 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps28Q9D1C8 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps28Q9D1C8 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Vps28Q9D1C8 Gm38027-201ENSMUST00000192315 235 ntBASIC17.72■□□□□ 0.43
Vps28Q9D1C8 Gm8969-201ENSMUST00000199694 526 ntBASIC17.72■□□□□ 0.43
Vps28Q9D1C8 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
Vps28Q9D1C8 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC17.72■□□□□ 0.43
Vps28Q9D1C8 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps28Q9D1C8 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps28Q9D1C8 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Vps28Q9D1C8 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps28Q9D1C8 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Vps28Q9D1C8 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Vps28Q9D1C8 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Vps28Q9D1C8 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Vps28Q9D1C8 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Vps28Q9D1C8 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Vps28Q9D1C8 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Vps28Q9D1C8 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Vps28Q9D1C8 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Vps28Q9D1C8 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
Vps28Q9D1C8 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Vps28Q9D1C8 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Vps28Q9D1C8 Gm26879-201ENSMUST00000181127 1176 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Vps28Q9D1C8 Ndufa12-201ENSMUST00000020209 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Vps28Q9D1C8 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Vps28Q9D1C8 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Vps28Q9D1C8 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Vps28Q9D1C8 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Vps28Q9D1C8 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
Vps28Q9D1C8 Cds2-202ENSMUST00000103181 8396 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Vps28Q9D1C8 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps28Q9D1C8 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps28Q9D1C8 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Vps28Q9D1C8 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps28Q9D1C8 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps28Q9D1C8 Zcchc6-207ENSMUST00000225576 2499 ntBASIC17.7■□□□□ 0.42
Vps28Q9D1C8 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Vps28Q9D1C8 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
Vps28Q9D1C8 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Vps28Q9D1C8 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Vps28Q9D1C8 Ssr2-207ENSMUST00000195014 1059 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Vps28Q9D1C8 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC17.7■□□□□ 0.42
Vps28Q9D1C8 AC153881.2-201ENSMUST00000214877 204 ntBASIC17.7■□□□□ 0.42
Vps28Q9D1C8 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms