Protein–RNA interactions for Protein: Q99LC2

Cstf1, Cleavage stimulation factor subunit 1, mousemouse

Known RBP Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cstf1Q99LC2 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cstf1Q99LC2 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cstf1Q99LC2 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cstf1Q99LC2 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Cstf1Q99LC2 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Cstf1Q99LC2 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cstf1Q99LC2 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cstf1Q99LC2 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Cstf1Q99LC2 Aamp-201ENSMUST00000006462 1817 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cstf1Q99LC2 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cstf1Q99LC2 Enpp1-202ENSMUST00000105520 6777 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cstf1Q99LC2 Rncr4-201ENSMUST00000194541 2234 ntBASIC17.25■□□□□ 0.35
Cstf1Q99LC2 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC17.25■□□□□ 0.35
Cstf1Q99LC2 Pmm1-201ENSMUST00000023112 1300 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cstf1Q99LC2 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cstf1Q99LC2 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cstf1Q99LC2 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cstf1Q99LC2 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Cstf1Q99LC2 Tsacc-202ENSMUST00000107556 584 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cstf1Q99LC2 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Cstf1Q99LC2 Epsti1-202ENSMUST00000169978 1175 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Cstf1Q99LC2 Gm28051-201ENSMUST00000179306 445 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
Cstf1Q99LC2 Gm34391-201ENSMUST00000203706 907 ntBASIC17.25■□□□□ 0.35
Cstf1Q99LC2 Gm9731-201ENSMUST00000209480 747 ntBASIC17.25■□□□□ 0.35
Cstf1Q99LC2 Epsti1-203ENSMUST00000227903 1178 ntAPPRIS ALT2 BASIC17.25■□□□□ 0.35
Cstf1Q99LC2 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cstf1Q99LC2 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cstf1Q99LC2 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cstf1Q99LC2 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Cstf1Q99LC2 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
Cstf1Q99LC2 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cstf1Q99LC2 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cstf1Q99LC2 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Cstf1Q99LC2 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cstf1Q99LC2 Gm37820-201ENSMUST00000194021 2147 ntBASIC17.24■□□□□ 0.35
Cstf1Q99LC2 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cstf1Q99LC2 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Cstf1Q99LC2 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Cstf1Q99LC2 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cstf1Q99LC2 Trim54-202ENSMUST00000202769 1408 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
Cstf1Q99LC2 Abr-202ENSMUST00000072740 5394 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Cstf1Q99LC2 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Cstf1Q99LC2 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Cstf1Q99LC2 Fgf20-202ENSMUST00000118639 587 ntTSL 3 BASIC17.24■□□□□ 0.35
Cstf1Q99LC2 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
Cstf1Q99LC2 Gm28577-201ENSMUST00000176106 741 ntTSL 5 BASIC17.24■□□□□ 0.35
Cstf1Q99LC2 Gm5864-201ENSMUST00000202263 970 ntBASIC17.24■□□□□ 0.35
Cstf1Q99LC2 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
Cstf1Q99LC2 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cstf1Q99LC2 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cstf1Q99LC2 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cstf1Q99LC2 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cstf1Q99LC2 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cstf1Q99LC2 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cstf1Q99LC2 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC17.23■□□□□ 0.35
Cstf1Q99LC2 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cstf1Q99LC2 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cstf1Q99LC2 Mir770-201ENSMUST00000103252 94 ntBASIC17.23■□□□□ 0.35
Cstf1Q99LC2 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC17.23■□□□□ 0.35
Cstf1Q99LC2 Bex1-203ENSMUST00000113120 718 ntAPPRIS P1 TSL 3 BASIC17.23■□□□□ 0.35
Cstf1Q99LC2 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cstf1Q99LC2 Gm3272-201ENSMUST00000181181 1229 ntBASIC17.23■□□□□ 0.35
Cstf1Q99LC2 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Cstf1Q99LC2 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Cstf1Q99LC2 AC120002.2-201ENSMUST00000220205 773 ntBASIC17.23■□□□□ 0.35
Cstf1Q99LC2 Il3ra-202ENSMUST00000223589 738 ntBASIC17.23■□□□□ 0.35
Cstf1Q99LC2 Gm10566-201ENSMUST00000086739 996 ntBASIC17.23■□□□□ 0.35
Cstf1Q99LC2 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC17.23■□□□□ 0.35
Cstf1Q99LC2 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC17.23■□□□□ 0.35
Cstf1Q99LC2 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cstf1Q99LC2 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
Cstf1Q99LC2 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Cstf1Q99LC2 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cstf1Q99LC2 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cstf1Q99LC2 Gm9194-201ENSMUST00000220749 1447 ntBASIC17.22■□□□□ 0.35
Cstf1Q99LC2 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Cstf1Q99LC2 Gm10418-201ENSMUST00000100943 576 ntBASIC17.22■□□□□ 0.35
Cstf1Q99LC2 Psma3-204ENSMUST00000160864 859 ntTSL 5 BASIC17.22■□□□□ 0.35
Cstf1Q99LC2 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Cstf1Q99LC2 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cstf1Q99LC2 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Cstf1Q99LC2 Pnmt-201ENSMUST00000041301 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cstf1Q99LC2 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cstf1Q99LC2 Rarb-207ENSMUST00000225921 2756 ntBASIC17.22■□□□□ 0.35
Cstf1Q99LC2 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cstf1Q99LC2 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cstf1Q99LC2 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cstf1Q99LC2 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cstf1Q99LC2 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Cstf1Q99LC2 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cstf1Q99LC2 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
Cstf1Q99LC2 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cstf1Q99LC2 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cstf1Q99LC2 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Cstf1Q99LC2 Ubl7-201ENSMUST00000163329 1364 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Cstf1Q99LC2 Gm13401-201ENSMUST00000117074 291 ntBASIC17.21■□□□□ 0.35
Cstf1Q99LC2 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Cstf1Q99LC2 Celrr-203ENSMUST00000185678 937 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Cstf1Q99LC2 Gm37025-201ENSMUST00000195159 829 ntBASIC17.21■□□□□ 0.35
Cstf1Q99LC2 Gm45328-201ENSMUST00000210942 917 ntBASIC17.21■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms