Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Brf1Q8CFK2 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Brf1Q8CFK2 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC20.9■□□□□ 0.94
Brf1Q8CFK2 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC20.9■□□□□ 0.94
Brf1Q8CFK2 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC20.9■□□□□ 0.94
Brf1Q8CFK2 AC156016.1-201ENSMUST00000227190 1035 ntBASIC20.9■□□□□ 0.94
Brf1Q8CFK2 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Brf1Q8CFK2 Cops9-201ENSMUST00000097642 438 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Brf1Q8CFK2 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC20.9■□□□□ 0.94
Brf1Q8CFK2 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Brf1Q8CFK2 Wac-207ENSMUST00000167020 5208 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
Brf1Q8CFK2 Atad3a-201ENSMUST00000030903 2413 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Brf1Q8CFK2 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
Brf1Q8CFK2 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Brf1Q8CFK2 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
Brf1Q8CFK2 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Brf1Q8CFK2 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
Brf1Q8CFK2 Timm23-208ENSMUST00000226683 750 ntBASIC20.89■□□□□ 0.93
Brf1Q8CFK2 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Brf1Q8CFK2 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
Brf1Q8CFK2 BC029722-201ENSMUST00000124586 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Brf1Q8CFK2 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
Brf1Q8CFK2 Ecel1-201ENSMUST00000027463 2695 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Brf1Q8CFK2 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
Brf1Q8CFK2 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Brf1Q8CFK2 Dcps-202ENSMUST00000119847 1445 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Brf1Q8CFK2 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Brf1Q8CFK2 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Brf1Q8CFK2 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Brf1Q8CFK2 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Brf1Q8CFK2 Gm42900-201ENSMUST00000197184 2167 ntBASIC20.88■□□□□ 0.93
Brf1Q8CFK2 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Brf1Q8CFK2 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC20.88■□□□□ 0.93
Brf1Q8CFK2 Gm38027-201ENSMUST00000192315 235 ntBASIC20.88■□□□□ 0.93
Brf1Q8CFK2 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC20.88■□□□□ 0.93
Brf1Q8CFK2 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
Brf1Q8CFK2 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC20.88■□□□□ 0.93
Brf1Q8CFK2 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Brf1Q8CFK2 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Brf1Q8CFK2 Fam171a1-204ENSMUST00000115099 4149 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Brf1Q8CFK2 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
Brf1Q8CFK2 Plekha4-206ENSMUST00000211155 2044 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
Brf1Q8CFK2 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Brf1Q8CFK2 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Brf1Q8CFK2 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Brf1Q8CFK2 Arhgef4-208ENSMUST00000211073 171 ntBASIC20.87■□□□□ 0.93
Brf1Q8CFK2 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Brf1Q8CFK2 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Brf1Q8CFK2 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC20.87■□□□□ 0.93
Brf1Q8CFK2 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Brf1Q8CFK2 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Brf1Q8CFK2 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Brf1Q8CFK2 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Brf1Q8CFK2 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC20.87■□□□□ 0.93
Brf1Q8CFK2 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Brf1Q8CFK2 Npas3-203ENSMUST00000223057 2724 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
Brf1Q8CFK2 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Brf1Q8CFK2 6330411D24Rik-201ENSMUST00000211105 1568 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Brf1Q8CFK2 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC20.86■□□□□ 0.93
Brf1Q8CFK2 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Brf1Q8CFK2 Gm2479-201ENSMUST00000173312 1053 ntTSL 3 BASIC20.86■□□□□ 0.93
Brf1Q8CFK2 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC20.86■□□□□ 0.93
Brf1Q8CFK2 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Brf1Q8CFK2 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Brf1Q8CFK2 Nme2-202ENSMUST00000072566 734 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Brf1Q8CFK2 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
Brf1Q8CFK2 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC20.86■□□□□ 0.93
Brf1Q8CFK2 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC20.86■□□□□ 0.93
Brf1Q8CFK2 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC20.85■□□□□ 0.93
Brf1Q8CFK2 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Brf1Q8CFK2 Gm6598-201ENSMUST00000202719 2615 ntBASIC20.85■□□□□ 0.93
Brf1Q8CFK2 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC20.85■□□□□ 0.93
Brf1Q8CFK2 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC20.85■□□□□ 0.93
Brf1Q8CFK2 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Brf1Q8CFK2 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
Brf1Q8CFK2 AL672049.1-201ENSMUST00000197943 91 ntBASIC20.85■□□□□ 0.93
Brf1Q8CFK2 Gm3375-201ENSMUST00000203929 796 ntBASIC20.85■□□□□ 0.93
Brf1Q8CFK2 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Brf1Q8CFK2 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC20.85■□□□□ 0.93
Brf1Q8CFK2 Tmf1-201ENSMUST00000095664 5732 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Brf1Q8CFK2 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Brf1Q8CFK2 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Brf1Q8CFK2 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Brf1Q8CFK2 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Brf1Q8CFK2 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Brf1Q8CFK2 Smim3-201ENSMUST00000042710 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Brf1Q8CFK2 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
Brf1Q8CFK2 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Brf1Q8CFK2 Gm45623-201ENSMUST00000210744 1457 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
Brf1Q8CFK2 Sept10-203ENSMUST00000220156 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Brf1Q8CFK2 Gm21814-202ENSMUST00000203277 873 ntBASIC20.84■□□□□ 0.93
Brf1Q8CFK2 Odf3b-204ENSMUST00000227834 930 ntBASIC20.84■□□□□ 0.93
Brf1Q8CFK2 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Brf1Q8CFK2 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
Brf1Q8CFK2 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Brf1Q8CFK2 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Brf1Q8CFK2 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC20.84■□□□□ 0.93
Brf1Q8CFK2 Impdh1-210ENSMUST00000162739 2471 ntTSL 5 BASIC20.84■□□□□ 0.93
Brf1Q8CFK2 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Brf1Q8CFK2 Nagpa-203ENSMUST00000147567 2230 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 17.4 ms