Protein–RNA interactions for Protein: Q8CEG5

Ccdc28b, Coiled-coil domain-containing protein 28B, mousemouse

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc28bQ8CEG5 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ccdc28bQ8CEG5 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Ccdc28bQ8CEG5 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Ccdc28bQ8CEG5 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Ccdc28bQ8CEG5 Arntl-201ENSMUST00000047321 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ccdc28bQ8CEG5 Nectin3-202ENSMUST00000023335 9116 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ccdc28bQ8CEG5 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC17.13■□□□□ 0.33
Ccdc28bQ8CEG5 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC17.13■□□□□ 0.33
Ccdc28bQ8CEG5 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ccdc28bQ8CEG5 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
Ccdc28bQ8CEG5 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC17.13■□□□□ 0.33
Ccdc28bQ8CEG5 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ccdc28bQ8CEG5 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ccdc28bQ8CEG5 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ccdc28bQ8CEG5 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc28bQ8CEG5 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc28bQ8CEG5 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc28bQ8CEG5 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
Ccdc28bQ8CEG5 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC17.12■□□□□ 0.33
Ccdc28bQ8CEG5 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC17.12■□□□□ 0.33
Ccdc28bQ8CEG5 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc28bQ8CEG5 Gm6420-201ENSMUST00000193885 723 ntBASIC17.12■□□□□ 0.33
Ccdc28bQ8CEG5 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc28bQ8CEG5 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
Ccdc28bQ8CEG5 Spdef-205ENSMUST00000167489 1708 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Ccdc28bQ8CEG5 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc28bQ8CEG5 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ccdc28bQ8CEG5 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Ccdc28bQ8CEG5 Tpm2-202ENSMUST00000107913 2098 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc28bQ8CEG5 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc28bQ8CEG5 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc28bQ8CEG5 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc28bQ8CEG5 Cdc25a-201ENSMUST00000094324 3632 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc28bQ8CEG5 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Ccdc28bQ8CEG5 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc28bQ8CEG5 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC17.11■□□□□ 0.33
Ccdc28bQ8CEG5 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Ccdc28bQ8CEG5 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC17.11■□□□□ 0.33
Ccdc28bQ8CEG5 Bag1-204ENSMUST00000215842 1068 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc28bQ8CEG5 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc28bQ8CEG5 Gm10129-202ENSMUST00000193100 1316 ntBASIC17.11■□□□□ 0.33
Ccdc28bQ8CEG5 Gm27029-202ENSMUST00000107259 1855 ntAPPRIS P5 TSL 5 BASIC17.11■□□□□ 0.33
Ccdc28bQ8CEG5 Gm16638-201ENSMUST00000148687 1865 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc28bQ8CEG5 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC17.11■□□□□ 0.33
Ccdc28bQ8CEG5 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc28bQ8CEG5 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc28bQ8CEG5 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc28bQ8CEG5 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc28bQ8CEG5 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc28bQ8CEG5 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC17.11■□□□□ 0.33
Ccdc28bQ8CEG5 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc28bQ8CEG5 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Ccdc28bQ8CEG5 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ccdc28bQ8CEG5 Gm8839-201ENSMUST00000121279 1645 ntBASIC17.1■□□□□ 0.33
Ccdc28bQ8CEG5 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc28bQ8CEG5 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc28bQ8CEG5 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc28bQ8CEG5 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc28bQ8CEG5 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC17.1■□□□□ 0.33
Ccdc28bQ8CEG5 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc28bQ8CEG5 Nespas-201ENSMUST00000143738 1083 ntBASIC17.1■□□□□ 0.33
Ccdc28bQ8CEG5 Mir8112-201ENSMUST00000184382 131 ntBASIC17.1■□□□□ 0.33
Ccdc28bQ8CEG5 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC17.1■□□□□ 0.33
Ccdc28bQ8CEG5 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc28bQ8CEG5 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc28bQ8CEG5 Ankrd37-201ENSMUST00000053558 927 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc28bQ8CEG5 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC17.1■□□□□ 0.33
Ccdc28bQ8CEG5 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc28bQ8CEG5 Dag1-201ENSMUST00000080435 4364 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc28bQ8CEG5 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc28bQ8CEG5 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc28bQ8CEG5 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ccdc28bQ8CEG5 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc28bQ8CEG5 Snx27-202ENSMUST00000107283 3531 ntAPPRIS P4 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc28bQ8CEG5 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc28bQ8CEG5 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc28bQ8CEG5 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc28bQ8CEG5 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC17.09■□□□□ 0.33
Ccdc28bQ8CEG5 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC17.09■□□□□ 0.33
Ccdc28bQ8CEG5 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc28bQ8CEG5 Isca1-201ENSMUST00000057115 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc28bQ8CEG5 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
Ccdc28bQ8CEG5 Tfeb-204ENSMUST00000113288 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc28bQ8CEG5 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Ccdc28bQ8CEG5 Zscan29-203ENSMUST00000146243 2894 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc28bQ8CEG5 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ccdc28bQ8CEG5 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Ccdc28bQ8CEG5 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Ccdc28bQ8CEG5 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Ccdc28bQ8CEG5 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc28bQ8CEG5 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc28bQ8CEG5 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc28bQ8CEG5 Gm2011-201ENSMUST00000203124 1263 ntBASIC17.08■□□□□ 0.32
Ccdc28bQ8CEG5 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc28bQ8CEG5 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc28bQ8CEG5 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc28bQ8CEG5 Was-201ENSMUST00000033505 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc28bQ8CEG5 Ppm1a-201ENSMUST00000021514 7668 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ccdc28bQ8CEG5 Gm11841-201ENSMUST00000117060 1963 ntBASIC17.08■□□□□ 0.32
Ccdc28bQ8CEG5 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 29.8 ms