Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Gm43294-201ENSMUST00000202850 2490 ntBASIC18.05■□□□□ 0.48
Ccdc40Q8BI79 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Ccdc40Q8BI79 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Ccdc40Q8BI79 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ccdc40Q8BI79 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ccdc40Q8BI79 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ccdc40Q8BI79 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ccdc40Q8BI79 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ccdc40Q8BI79 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ccdc40Q8BI79 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ccdc40Q8BI79 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ccdc40Q8BI79 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC18.04■□□□□ 0.48
Ccdc40Q8BI79 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC18.04■□□□□ 0.48
Ccdc40Q8BI79 6230400D17Rik-202ENSMUST00000224976 1019 ntBASIC18.04■□□□□ 0.48
Ccdc40Q8BI79 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ccdc40Q8BI79 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ccdc40Q8BI79 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Ccdc40Q8BI79 Trip10-201ENSMUST00000019631 2224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ccdc40Q8BI79 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ccdc40Q8BI79 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ccdc40Q8BI79 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Ccdc40Q8BI79 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
Ccdc40Q8BI79 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
Ccdc40Q8BI79 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ccdc40Q8BI79 Slc16a7-205ENSMUST00000210780 2562 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Ccdc40Q8BI79 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC18.03■□□□□ 0.48
Ccdc40Q8BI79 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Ccdc40Q8BI79 Gm10532-201ENSMUST00000181913 2301 ntTSL 2 BASIC18.03■□□□□ 0.48
Ccdc40Q8BI79 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Ccdc40Q8BI79 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ccdc40Q8BI79 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ccdc40Q8BI79 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ccdc40Q8BI79 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
Ccdc40Q8BI79 Mtag2-201ENSMUST00000058665 714 ntBASIC18.03■□□□□ 0.48
Ccdc40Q8BI79 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC18.03■□□□□ 0.48
Ccdc40Q8BI79 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC18.03■□□□□ 0.48
Ccdc40Q8BI79 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ccdc40Q8BI79 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ccdc40Q8BI79 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Ccdc40Q8BI79 Dancr-204ENSMUST00000132389 2347 ntBASIC18.03■□□□□ 0.48
Ccdc40Q8BI79 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Ccdc40Q8BI79 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Ccdc40Q8BI79 Slc47a1-201ENSMUST00000010267 2639 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
Ccdc40Q8BI79 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Ccdc40Q8BI79 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Ccdc40Q8BI79 Dnaaf5-203ENSMUST00000196441 2426 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Ccdc40Q8BI79 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Ccdc40Q8BI79 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Ccdc40Q8BI79 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Ccdc40Q8BI79 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Ccdc40Q8BI79 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Ccdc40Q8BI79 Gm11249-201ENSMUST00000117071 859 ntBASIC18.02■□□□□ 0.48
Ccdc40Q8BI79 Gm20049-201ENSMUST00000219950 730 ntBASIC18.02■□□□□ 0.48
Ccdc40Q8BI79 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Ccdc40Q8BI79 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Ccdc40Q8BI79 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Ccdc40Q8BI79 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.47
Ccdc40Q8BI79 Anapc7-203ENSMUST00000122010 2950 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
Ccdc40Q8BI79 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Ccdc40Q8BI79 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Ccdc40Q8BI79 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Ccdc40Q8BI79 Trap1-201ENSMUST00000006137 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Ccdc40Q8BI79 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Ccdc40Q8BI79 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Ccdc40Q8BI79 Lad1-201ENSMUST00000038760 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Ccdc40Q8BI79 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Ccdc40Q8BI79 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Ccdc40Q8BI79 Gm29241-201ENSMUST00000189260 1096 ntBASIC18.01■□□□□ 0.47
Ccdc40Q8BI79 AC163280.1-201ENSMUST00000228194 1100 ntBASIC18.01■□□□□ 0.47
Ccdc40Q8BI79 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Ccdc40Q8BI79 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Ccdc40Q8BI79 Ddhd2-206ENSMUST00000211688 2265 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Ccdc40Q8BI79 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Ccdc40Q8BI79 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC18■□□□□ 0.47
Ccdc40Q8BI79 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC18■□□□□ 0.47
Ccdc40Q8BI79 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
Ccdc40Q8BI79 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
Ccdc40Q8BI79 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC18■□□□□ 0.47
Ccdc40Q8BI79 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Ccdc40Q8BI79 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC18■□□□□ 0.47
Ccdc40Q8BI79 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC18■□□□□ 0.47
Ccdc40Q8BI79 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Ccdc40Q8BI79 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC18■□□□□ 0.47
Ccdc40Q8BI79 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC18■□□□□ 0.47
Ccdc40Q8BI79 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Ccdc40Q8BI79 Myb-201ENSMUST00000020158 3074 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Ccdc40Q8BI79 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC18■□□□□ 0.47
Ccdc40Q8BI79 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Ccdc40Q8BI79 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Ccdc40Q8BI79 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Ccdc40Q8BI79 Nrg3-201ENSMUST00000166968 4011 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
Ccdc40Q8BI79 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC17.99■□□□□ 0.47
Ccdc40Q8BI79 Shq1-202ENSMUST00000113312 6816 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ccdc40Q8BI79 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ccdc40Q8BI79 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ccdc40Q8BI79 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ccdc40Q8BI79 Lactbl1-201ENSMUST00000178843 2954 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
Ccdc40Q8BI79 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ccdc40Q8BI79 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
Ccdc40Q8BI79 Gm15375-201ENSMUST00000119510 849 ntBASIC17.99■□□□□ 0.47
Retrieved 100 of 76,532 protein–RNA pairs in 27.2 ms