Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC16.53■□□□□ 0.24
Nr1h4Q60641 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
Nr1h4Q60641 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1h4Q60641 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1h4Q60641 Rrp9-201ENSMUST00000047721 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1h4Q60641 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
Nr1h4Q60641 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC16.53■□□□□ 0.24
Nr1h4Q60641 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC16.53■□□□□ 0.24
Nr1h4Q60641 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1h4Q60641 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC16.53■□□□□ 0.24
Nr1h4Q60641 Mrpl2-201ENSMUST00000002844 1031 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1h4Q60641 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1h4Q60641 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1h4Q60641 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1h4Q60641 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC16.53■□□□□ 0.24
Nr1h4Q60641 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1h4Q60641 AC108858.1-201ENSMUST00000228461 1498 ntBASIC16.53■□□□□ 0.24
Nr1h4Q60641 Tsc22d2-203ENSMUST00000199164 4659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1h4Q60641 Mtfr1l-202ENSMUST00000116279 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1h4Q60641 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1h4Q60641 Naa60-212ENSMUST00000186375 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Nr1h4Q60641 Rock1-201ENSMUST00000067947 6187 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
Nr1h4Q60641 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
Nr1h4Q60641 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Nr1h4Q60641 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Nr1h4Q60641 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Nr1h4Q60641 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Nr1h4Q60641 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Nr1h4Q60641 Isoc2a-201ENSMUST00000125249 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Nr1h4Q60641 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Nr1h4Q60641 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.24
Nr1h4Q60641 Gm2399-201ENSMUST00000104944 225 ntBASIC16.52■□□□□ 0.24
Nr1h4Q60641 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC16.52■□□□□ 0.24
Nr1h4Q60641 Gm42642-201ENSMUST00000200683 355 ntBASIC16.52■□□□□ 0.24
Nr1h4Q60641 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Nr1h4Q60641 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Nr1h4Q60641 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Nr1h4Q60641 Fbxo33-201ENSMUST00000043204 3688 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
Nr1h4Q60641 Camta1-202ENSMUST00000097774 8533 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
Nr1h4Q60641 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Nr1h4Q60641 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Nr1h4Q60641 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.23
Nr1h4Q60641 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Nr1h4Q60641 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Nr1h4Q60641 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
Nr1h4Q60641 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
Nr1h4Q60641 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC16.51■□□□□ 0.23
Nr1h4Q60641 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
Nr1h4Q60641 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Nr1h4Q60641 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Nr1h4Q60641 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Nr1h4Q60641 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Nr1h4Q60641 Ing1-202ENSMUST00000209565 1971 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Nr1h4Q60641 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Nr1h4Q60641 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Nr1h4Q60641 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Nr1h4Q60641 Podnl1-201ENSMUST00000093380 2090 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Nr1h4Q60641 Prodh-201ENSMUST00000003620 2385 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Nr1h4Q60641 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
Nr1h4Q60641 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Nr1h4Q60641 Gm7290-201ENSMUST00000104990 617 ntBASIC16.5■□□□□ 0.23
Nr1h4Q60641 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC16.5■□□□□ 0.23
Nr1h4Q60641 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Nr1h4Q60641 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Nr1h4Q60641 Gm12918-201ENSMUST00000120234 636 ntBASIC16.5■□□□□ 0.23
Nr1h4Q60641 Gm15710-201ENSMUST00000121821 636 ntBASIC16.5■□□□□ 0.23
Nr1h4Q60641 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Nr1h4Q60641 Gm5075-201ENSMUST00000196916 622 ntBASIC16.5■□□□□ 0.23
Nr1h4Q60641 AV356131-201ENSMUST00000206201 750 ntBASIC16.5■□□□□ 0.23
Nr1h4Q60641 Gm6365-201ENSMUST00000054711 744 ntBASIC16.5■□□□□ 0.23
Nr1h4Q60641 Rpl13-ps6-201ENSMUST00000079761 636 ntBASIC16.5■□□□□ 0.23
Nr1h4Q60641 Rpl13-ps3-201ENSMUST00000079960 624 ntBASIC16.5■□□□□ 0.23
Nr1h4Q60641 Zfp783-201ENSMUST00000095946 670 ntBASIC16.5■□□□□ 0.23
Nr1h4Q60641 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
Nr1h4Q60641 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
Nr1h4Q60641 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Nr1h4Q60641 Gm43272-201ENSMUST00000200599 1584 ntBASIC16.5■□□□□ 0.23
Nr1h4Q60641 Cep85l-205ENSMUST00000220443 7425 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
Nr1h4Q60641 Stk32c-202ENSMUST00000165870 1883 ntTSL 5 BASIC16.5■□□□□ 0.23
Nr1h4Q60641 Ppp1r1b-201ENSMUST00000078694 2001 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Nr1h4Q60641 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Nr1h4Q60641 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Nr1h4Q60641 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Nr1h4Q60641 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Nr1h4Q60641 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Nr1h4Q60641 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Nr1h4Q60641 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Nr1h4Q60641 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Nr1h4Q60641 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Nr1h4Q60641 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Nr1h4Q60641 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC16.49■□□□□ 0.23
Nr1h4Q60641 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
Nr1h4Q60641 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC16.49■□□□□ 0.23
Nr1h4Q60641 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
Nr1h4Q60641 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Nr1h4Q60641 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Nr1h4Q60641 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Nr1h4Q60641 Foxo1-201ENSMUST00000053764 8665 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Nr1h4Q60641 Ptch1-201ENSMUST00000021921 7725 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Nr1h4Q60641 Trabd-201ENSMUST00000081702 2439 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 76,532 protein–RNA pairs in 19.1 ms