Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Mir770-201ENSMUST00000103252 94 ntBASIC18.22■□□□□ 0.51
Upf3aQ3ULJ3 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC18.22■□□□□ 0.51
Upf3aQ3ULJ3 Otx2os1-206ENSMUST00000228153 787 ntBASIC18.22■□□□□ 0.51
Upf3aQ3ULJ3 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Upf3aQ3ULJ3 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Upf3aQ3ULJ3 Irf3-213ENSMUST00000209066 1712 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Upf3aQ3ULJ3 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Upf3aQ3ULJ3 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Upf3aQ3ULJ3 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Upf3aQ3ULJ3 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Upf3aQ3ULJ3 Gm29430-202ENSMUST00000191453 2015 ntTSL 5 BASIC18.22■□□□□ 0.51
Upf3aQ3ULJ3 Trp73-203ENSMUST00000105643 1916 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Upf3aQ3ULJ3 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Upf3aQ3ULJ3 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC18.21■□□□□ 0.51
Upf3aQ3ULJ3 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Upf3aQ3ULJ3 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Upf3aQ3ULJ3 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC18.21■□□□□ 0.51
Upf3aQ3ULJ3 Mir3081-201ENSMUST00000175305 84 ntBASIC18.21■□□□□ 0.51
Upf3aQ3ULJ3 Gm27742-201ENSMUST00000184667 60 ntBASIC18.21■□□□□ 0.51
Upf3aQ3ULJ3 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Upf3aQ3ULJ3 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Upf3aQ3ULJ3 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Upf3aQ3ULJ3 Gm19721-201ENSMUST00000195284 1764 ntBASIC18.21■□□□□ 0.51
Upf3aQ3ULJ3 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Upf3aQ3ULJ3 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC18.21■□□□□ 0.51
Upf3aQ3ULJ3 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Upf3aQ3ULJ3 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Upf3aQ3ULJ3 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Upf3aQ3ULJ3 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
Upf3aQ3ULJ3 Atp5c1-202ENSMUST00000114896 1735 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Upf3aQ3ULJ3 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Upf3aQ3ULJ3 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Upf3aQ3ULJ3 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Upf3aQ3ULJ3 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Upf3aQ3ULJ3 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Upf3aQ3ULJ3 Gm7153-201ENSMUST00000117092 455 ntBASIC18.2■□□□□ 0.5
Upf3aQ3ULJ3 Umpk-ps-201ENSMUST00000211897 827 ntBASIC18.2■□□□□ 0.5
Upf3aQ3ULJ3 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Upf3aQ3ULJ3 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Upf3aQ3ULJ3 Gm45141-201ENSMUST00000206502 1888 ntBASIC18.2■□□□□ 0.5
Upf3aQ3ULJ3 Smtnl2-201ENSMUST00000050226 2624 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Upf3aQ3ULJ3 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Upf3aQ3ULJ3 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Upf3aQ3ULJ3 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Upf3aQ3ULJ3 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Upf3aQ3ULJ3 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
Upf3aQ3ULJ3 Pou2f2-202ENSMUST00000108413 1599 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Upf3aQ3ULJ3 0610025J13Rik-203ENSMUST00000180374 713 ntTSL 5 BASIC18.19■□□□□ 0.5
Upf3aQ3ULJ3 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Upf3aQ3ULJ3 Cebpa-201ENSMUST00000042985 2626 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Upf3aQ3ULJ3 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Upf3aQ3ULJ3 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Upf3aQ3ULJ3 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Upf3aQ3ULJ3 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC18.19■□□□□ 0.5
Upf3aQ3ULJ3 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Upf3aQ3ULJ3 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Upf3aQ3ULJ3 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Upf3aQ3ULJ3 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Upf3aQ3ULJ3 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Upf3aQ3ULJ3 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Upf3aQ3ULJ3 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Upf3aQ3ULJ3 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Upf3aQ3ULJ3 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC18.18■□□□□ 0.5
Upf3aQ3ULJ3 Thoc3-201ENSMUST00000026990 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Upf3aQ3ULJ3 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Upf3aQ3ULJ3 Krt15-201ENSMUST00000107411 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Upf3aQ3ULJ3 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Upf3aQ3ULJ3 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Upf3aQ3ULJ3 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Upf3aQ3ULJ3 Gm45328-201ENSMUST00000210942 917 ntBASIC18.18■□□□□ 0.5
Upf3aQ3ULJ3 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Upf3aQ3ULJ3 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Upf3aQ3ULJ3 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Upf3aQ3ULJ3 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Upf3aQ3ULJ3 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Upf3aQ3ULJ3 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Upf3aQ3ULJ3 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Upf3aQ3ULJ3 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Upf3aQ3ULJ3 Ptgis-202ENSMUST00000088041 1711 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Upf3aQ3ULJ3 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Upf3aQ3ULJ3 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Upf3aQ3ULJ3 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC18.17■□□□□ 0.5
Upf3aQ3ULJ3 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Upf3aQ3ULJ3 Hist1h2bc-201ENSMUST00000018246 1156 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Upf3aQ3ULJ3 AC122351.1-201ENSMUST00000220467 126 ntBASIC18.17■□□□□ 0.5
Upf3aQ3ULJ3 Hist1h2ba-201ENSMUST00000052776 384 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
Upf3aQ3ULJ3 Rln3-201ENSMUST00000061923 634 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Upf3aQ3ULJ3 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Upf3aQ3ULJ3 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Upf3aQ3ULJ3 Gprc5c-203ENSMUST00000122967 1709 ntTSL 5 BASIC18.17■□□□□ 0.5
Upf3aQ3ULJ3 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Upf3aQ3ULJ3 Fam71e1-202ENSMUST00000205359 1307 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
Upf3aQ3ULJ3 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Upf3aQ3ULJ3 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Upf3aQ3ULJ3 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
Upf3aQ3ULJ3 Tnfrsf25-201ENSMUST00000025706 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Upf3aQ3ULJ3 2810408A11Rik-204ENSMUST00000108621 1455 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Upf3aQ3ULJ3 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Upf3aQ3ULJ3 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Upf3aQ3ULJ3 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 32.9 ms