Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rfx1P48377 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rfx1P48377 F12-201ENSMUST00000021948 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rfx1P48377 Cdc42ep3-201ENSMUST00000068958 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rfx1P48377 Tlk1-201ENSMUST00000038584 4280 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Rfx1P48377 Gabra5-202ENSMUST00000206382 2607 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
Rfx1P48377 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Rfx1P48377 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC20.71■□□□□ 0.91
Rfx1P48377 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Rfx1P48377 Ube3c-201ENSMUST00000049453 5048 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Rfx1P48377 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Rfx1P48377 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Rfx1P48377 Gldc-201ENSMUST00000025778 3754 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Rfx1P48377 Gm38285-201ENSMUST00000192928 922 ntBASIC20.71■□□□□ 0.91
Rfx1P48377 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC20.71■□□□□ 0.91
Rfx1P48377 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Rfx1P48377 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Rfx1P48377 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC20.71■□□□□ 0.91
Rfx1P48377 Fbrsl1-202ENSMUST00000069483 4720 ntAPPRIS P2 TSL 5 BASIC20.71■□□□□ 0.91
Rfx1P48377 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Rfx1P48377 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Rfx1P48377 Cacna1c-216ENSMUST00000188522 7338 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.91
Rfx1P48377 Mbp-201ENSMUST00000047865 2492 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Rfx1P48377 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Rfx1P48377 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Rfx1P48377 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Rfx1P48377 Fam57b-201ENSMUST00000079423 2328 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Rfx1P48377 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Rfx1P48377 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
Rfx1P48377 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC20.7■□□□□ 0.9
Rfx1P48377 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Rfx1P48377 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC20.7■□□□□ 0.9
Rfx1P48377 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
Rfx1P48377 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Rfx1P48377 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC20.7■□□□□ 0.9
Rfx1P48377 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Rfx1P48377 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Rfx1P48377 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Rfx1P48377 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Rfx1P48377 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Rfx1P48377 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Rfx1P48377 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC20.7■□□□□ 0.9
Rfx1P48377 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC20.7■□□□□ 0.9
Rfx1P48377 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Rfx1P48377 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
Rfx1P48377 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC20.69■□□□□ 0.9
Rfx1P48377 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC20.69■□□□□ 0.9
Rfx1P48377 Gm6365-201ENSMUST00000054711 744 ntBASIC20.69■□□□□ 0.9
Rfx1P48377 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Rfx1P48377 Nek2-201ENSMUST00000027931 3227 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Rfx1P48377 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Rfx1P48377 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Rfx1P48377 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Rfx1P48377 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Rfx1P48377 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Rfx1P48377 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Rfx1P48377 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Rfx1P48377 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC20.68■□□□□ 0.9
Rfx1P48377 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Rfx1P48377 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Rfx1P48377 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC20.68■□□□□ 0.9
Rfx1P48377 Gm13620-201ENSMUST00000131198 511 ntTSL 3 BASIC20.68■□□□□ 0.9
Rfx1P48377 Dpyd-204ENSMUST00000149101 531 ntTSL 3 BASIC20.68■□□□□ 0.9
Rfx1P48377 Gm18671-201ENSMUST00000214826 683 ntBASIC20.68■□□□□ 0.9
Rfx1P48377 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Rfx1P48377 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Rfx1P48377 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Rfx1P48377 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Rfx1P48377 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC20.68■□□□□ 0.9
Rfx1P48377 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Rfx1P48377 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Rfx1P48377 Zfyve19-201ENSMUST00000090174 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Rfx1P48377 Gm26580-201ENSMUST00000181002 2095 ntTSL 5 BASIC20.68■□□□□ 0.9
Rfx1P48377 Guca1b-202ENSMUST00000145462 1556 ntTSL 2 BASIC20.68■□□□□ 0.9
Rfx1P48377 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Rfx1P48377 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC20.67■□□□□ 0.9
Rfx1P48377 Srcin1-203ENSMUST00000107596 7054 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Rfx1P48377 Arhgap39-202ENSMUST00000077821 4494 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Rfx1P48377 Polr3e-203ENSMUST00000207481 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Rfx1P48377 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
Rfx1P48377 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Rfx1P48377 Itgb7-201ENSMUST00000001327 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Rfx1P48377 Rnf128-201ENSMUST00000113026 2750 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Rfx1P48377 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Rfx1P48377 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC20.67■□□□□ 0.9
Rfx1P48377 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC20.67■□□□□ 0.9
Rfx1P48377 Gm42642-201ENSMUST00000200683 355 ntBASIC20.67■□□□□ 0.9
Rfx1P48377 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Rfx1P48377 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Rfx1P48377 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Rfx1P48377 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC20.67■□□□□ 0.9
Rfx1P48377 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Rfx1P48377 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Rfx1P48377 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Rfx1P48377 Susd1-201ENSMUST00000040166 3295 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Rfx1P48377 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Rfx1P48377 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Rfx1P48377 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Rfx1P48377 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Rfx1P48377 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 73.4 ms