Protein–RNA interactions for Protein: P13705

Msh3, DNA mismatch repair protein Msh3, mousemouse

Predictions only

Length 1,091 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh3P13705 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Msh3P13705 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC19.04■□□□□ 0.64
Msh3P13705 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Msh3P13705 Gm7638-201ENSMUST00000121348 967 ntBASIC19.04■□□□□ 0.64
Msh3P13705 Mir5122-201ENSMUST00000175004 89 ntBASIC19.04■□□□□ 0.64
Msh3P13705 Spcs1-207ENSMUST00000228767 1008 ntBASIC19.04■□□□□ 0.64
Msh3P13705 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Msh3P13705 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
Msh3P13705 Arfip2-202ENSMUST00000084782 2254 ntAPPRIS P2 TSL 5 BASIC19.04■□□□□ 0.64
Msh3P13705 Rpf1-203ENSMUST00000199079 1978 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Msh3P13705 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
Msh3P13705 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Msh3P13705 Ffar3-201ENSMUST00000094583 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Msh3P13705 Zufsp-202ENSMUST00000218055 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Msh3P13705 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC19.03■□□□□ 0.64
Msh3P13705 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Msh3P13705 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC19.03■□□□□ 0.64
Msh3P13705 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC19.03■□□□□ 0.64
Msh3P13705 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC19.03■□□□□ 0.64
Msh3P13705 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Msh3P13705 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Msh3P13705 Gm10812-201ENSMUST00000099864 546 ntBASIC19.03■□□□□ 0.64
Msh3P13705 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC19.03■□□□□ 0.64
Msh3P13705 Tnfrsf25-202ENSMUST00000035275 1603 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
Msh3P13705 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC19.03■□□□□ 0.64
Msh3P13705 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Msh3P13705 Plekhg3-207ENSMUST00000219063 4535 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
Msh3P13705 Ankle2-202ENSMUST00000086674 5025 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
Msh3P13705 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
Msh3P13705 Sfrp4-201ENSMUST00000002883 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Msh3P13705 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Msh3P13705 Gm45148-201ENSMUST00000208578 513 ntTSL 5 BASIC19.02■□□□□ 0.64
Msh3P13705 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
Msh3P13705 Otx2os1-204ENSMUST00000227221 751 ntBASIC19.02■□□□□ 0.64
Msh3P13705 2310002F09Rik-201ENSMUST00000181454 1607 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Msh3P13705 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Msh3P13705 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Msh3P13705 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Msh3P13705 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC19.02■□□□□ 0.64
Msh3P13705 Slc26a10-205ENSMUST00000222911 3067 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.63
Msh3P13705 Msmo1-201ENSMUST00000034015 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Msh3P13705 Aifm1-201ENSMUST00000037349 2237 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
Msh3P13705 Mmp23-201ENSMUST00000030937 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Msh3P13705 Larp1-203ENSMUST00000178636 6617 ntAPPRIS P2 TSL 5 BASIC19.01■□□□□ 0.63
Msh3P13705 Gm26592-201ENSMUST00000180870 1730 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Msh3P13705 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Msh3P13705 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC19.01■□□□□ 0.63
Msh3P13705 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC19.01■□□□□ 0.63
Msh3P13705 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC19.01■□□□□ 0.63
Msh3P13705 AC156016.1-201ENSMUST00000227190 1035 ntBASIC19.01■□□□□ 0.63
Msh3P13705 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
Msh3P13705 Clcn2-202ENSMUST00000120099 2812 ntAPPRIS ALT2 TSL 5 BASIC19.01■□□□□ 0.63
Msh3P13705 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Msh3P13705 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Msh3P13705 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Msh3P13705 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Msh3P13705 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Msh3P13705 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Msh3P13705 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Msh3P13705 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Msh3P13705 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Msh3P13705 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC19■□□□□ 0.63
Msh3P13705 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC19■□□□□ 0.63
Msh3P13705 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC19■□□□□ 0.63
Msh3P13705 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC19■□□□□ 0.63
Msh3P13705 Rara-204ENSMUST00000107475 2469 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Msh3P13705 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Msh3P13705 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC19■□□□□ 0.63
Msh3P13705 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Msh3P13705 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Msh3P13705 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Msh3P13705 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Msh3P13705 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Msh3P13705 Tedc2-201ENSMUST00000024930 2166 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Msh3P13705 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Msh3P13705 Sim1-202ENSMUST00000219436 1687 ntTSL 5 BASIC18.99■□□□□ 0.63
Msh3P13705 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Msh3P13705 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC18.99■□□□□ 0.63
Msh3P13705 Cxadr-201ENSMUST00000023572 5734 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
Msh3P13705 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC18.99■□□□□ 0.63
Msh3P13705 Tmem270-201ENSMUST00000047305 932 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Msh3P13705 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Msh3P13705 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Msh3P13705 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
Msh3P13705 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Msh3P13705 Mta3-203ENSMUST00000112350 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Msh3P13705 Hdhd2-202ENSMUST00000097521 1716 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Msh3P13705 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Msh3P13705 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
Msh3P13705 Atp6v1c1-201ENSMUST00000022904 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Msh3P13705 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
Msh3P13705 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Msh3P13705 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Msh3P13705 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Msh3P13705 Dap-201ENSMUST00000044524 1555 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Msh3P13705 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Msh3P13705 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Msh3P13705 Gm16401-202ENSMUST00000197463 2074 ntBASIC18.98■□□□□ 0.63
Msh3P13705 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Msh3P13705 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC18.98■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms