Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Lmx1bO88609 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Lmx1bO88609 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC15.67■□□□□ 0.1
Lmx1bO88609 Gadd45b-203ENSMUST00000220246 732 ntTSL 2 BASIC15.67■□□□□ 0.1
Lmx1bO88609 Fgf8-201ENSMUST00000026240 1117 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lmx1bO88609 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lmx1bO88609 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lmx1bO88609 Fam20c-201ENSMUST00000026972 3582 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lmx1bO88609 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lmx1bO88609 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Lmx1bO88609 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lmx1bO88609 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lmx1bO88609 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Lmx1bO88609 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Lmx1bO88609 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lmx1bO88609 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Lmx1bO88609 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lmx1bO88609 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lmx1bO88609 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lmx1bO88609 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC15.66■□□□□ 0.1
Lmx1bO88609 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lmx1bO88609 Stox1-202ENSMUST00000133371 3510 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lmx1bO88609 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC15.66■□□□□ 0.1
Lmx1bO88609 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Lmx1bO88609 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lmx1bO88609 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lmx1bO88609 Chmp2a-203ENSMUST00000210587 930 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
Lmx1bO88609 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lmx1bO88609 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lmx1bO88609 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lmx1bO88609 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lmx1bO88609 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lmx1bO88609 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Lmx1bO88609 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Lmx1bO88609 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lmx1bO88609 Gm37374-201ENSMUST00000194954 1829 ntBASIC15.66■□□□□ 0.1
Lmx1bO88609 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Lmx1bO88609 Fgf4-201ENSMUST00000060336 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lmx1bO88609 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lmx1bO88609 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lmx1bO88609 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC15.65■□□□□ 0.1
Lmx1bO88609 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lmx1bO88609 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lmx1bO88609 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lmx1bO88609 Eif4g3-202ENSMUST00000084214 6139 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lmx1bO88609 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lmx1bO88609 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lmx1bO88609 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lmx1bO88609 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lmx1bO88609 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lmx1bO88609 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lmx1bO88609 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lmx1bO88609 Gm43353-201ENSMUST00000199224 1295 ntBASIC15.65■□□□□ 0.1
Lmx1bO88609 Gm29791-202ENSMUST00000207888 369 ntBASIC15.65■□□□□ 0.1
Lmx1bO88609 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lmx1bO88609 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lmx1bO88609 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lmx1bO88609 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Lmx1bO88609 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Lmx1bO88609 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Lmx1bO88609 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lmx1bO88609 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC15.65■□□□□ 0.1
Lmx1bO88609 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lmx1bO88609 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Lmx1bO88609 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Lmx1bO88609 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Lmx1bO88609 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Lmx1bO88609 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Lmx1bO88609 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Lmx1bO88609 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
Lmx1bO88609 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Lmx1bO88609 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC15.64■□□□□ 0.09
Lmx1bO88609 Gm27463-201ENSMUST00000183569 57 ntBASIC15.64■□□□□ 0.09
Lmx1bO88609 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
Lmx1bO88609 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC15.64■□□□□ 0.09
Lmx1bO88609 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC15.64■□□□□ 0.09
Lmx1bO88609 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC15.64■□□□□ 0.09
Lmx1bO88609 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Lmx1bO88609 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Lmx1bO88609 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Lmx1bO88609 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
Lmx1bO88609 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Lmx1bO88609 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
Lmx1bO88609 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Lmx1bO88609 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Lmx1bO88609 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Lmx1bO88609 Gm19439-201ENSMUST00000198195 2273 ntBASIC15.64■□□□□ 0.09
Lmx1bO88609 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Lmx1bO88609 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC15.64■□□□□ 0.09
Lmx1bO88609 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
Lmx1bO88609 Rgmb-201ENSMUST00000170578 2633 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Lmx1bO88609 Uri1-201ENSMUST00000085513 3441 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Lmx1bO88609 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Lmx1bO88609 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
Lmx1bO88609 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Lmx1bO88609 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Lmx1bO88609 Eif2b4-201ENSMUST00000077693 2025 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Lmx1bO88609 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Lmx1bO88609 Zbtb5-204ENSMUST00000180217 4708 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
Lmx1bO88609 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 36 ms