Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC16.49■□□□□ 0.23
Clk3O35492 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Clk3O35492 Txnl1-201ENSMUST00000025476 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Clk3O35492 Mag-201ENSMUST00000040548 2419 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Clk3O35492 Il1rn-201ENSMUST00000114482 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Clk3O35492 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC16.49■□□□□ 0.23
Clk3O35492 Gm15743-202ENSMUST00000182690 1901 ntBASIC16.49■□□□□ 0.23
Clk3O35492 Cxcl14-202ENSMUST00000224801 1467 ntBASIC16.48■□□□□ 0.23
Clk3O35492 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Clk3O35492 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Clk3O35492 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
Clk3O35492 Sult2b1-204ENSMUST00000209739 1858 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Clk3O35492 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Clk3O35492 Sox4-201ENSMUST00000067230 4795 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
Clk3O35492 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
Clk3O35492 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Clk3O35492 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC16.48■□□□□ 0.23
Clk3O35492 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC16.48■□□□□ 0.23
Clk3O35492 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Clk3O35492 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Clk3O35492 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Clk3O35492 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Clk3O35492 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC16.48■□□□□ 0.23
Clk3O35492 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
Clk3O35492 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Clk3O35492 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Clk3O35492 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC16.48■□□□□ 0.23
Clk3O35492 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Clk3O35492 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Clk3O35492 B4galnt4-201ENSMUST00000048002 3556 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Clk3O35492 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Clk3O35492 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Clk3O35492 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC16.48■□□□□ 0.23
Clk3O35492 Gm38345-201ENSMUST00000192635 1748 ntBASIC16.48■□□□□ 0.23
Clk3O35492 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
Clk3O35492 Eepd1-201ENSMUST00000040677 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Clk3O35492 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Clk3O35492 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Clk3O35492 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Clk3O35492 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
Clk3O35492 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC16.47■□□□□ 0.23
Clk3O35492 Crtap-201ENSMUST00000084881 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Clk3O35492 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
Clk3O35492 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Clk3O35492 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Clk3O35492 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Clk3O35492 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
Clk3O35492 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC16.47■□□□□ 0.23
Clk3O35492 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
Clk3O35492 AC167978.1-201ENSMUST00000182488 456 ntTSL 3 BASIC16.47■□□□□ 0.23
Clk3O35492 Wnt10b-205ENSMUST00000226846 1204 ntBASIC16.47■□□□□ 0.23
Clk3O35492 Grp-201ENSMUST00000025395 862 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
Clk3O35492 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Clk3O35492 Bambi-201ENSMUST00000025075 5040 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Clk3O35492 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Clk3O35492 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
Clk3O35492 Zmym3-206ENSMUST00000120107 5882 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
Clk3O35492 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC16.47■□□□□ 0.23
Clk3O35492 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Clk3O35492 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Clk3O35492 Ppm1d-201ENSMUST00000020835 2899 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Clk3O35492 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Clk3O35492 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
Clk3O35492 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Clk3O35492 Vps53-203ENSMUST00000108419 2209 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Clk3O35492 Rala-201ENSMUST00000009003 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Clk3O35492 Stard7-202ENSMUST00000110375 3116 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Clk3O35492 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Clk3O35492 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC16.46■□□□□ 0.23
Clk3O35492 Fam126a-201ENSMUST00000030849 5659 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Clk3O35492 Cdkl3-203ENSMUST00000109076 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Clk3O35492 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Clk3O35492 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Clk3O35492 Dusp4-201ENSMUST00000033930 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Clk3O35492 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Clk3O35492 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Clk3O35492 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Clk3O35492 Gm12896-201ENSMUST00000118430 226 ntBASIC16.46■□□□□ 0.23
Clk3O35492 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Clk3O35492 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Clk3O35492 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Clk3O35492 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Clk3O35492 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Clk3O35492 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Clk3O35492 Mfsd13a-202ENSMUST00000128041 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Clk3O35492 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC16.46■□□□□ 0.23
Clk3O35492 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Clk3O35492 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Clk3O35492 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Clk3O35492 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
Clk3O35492 Mfsd10-202ENSMUST00000114329 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Clk3O35492 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Clk3O35492 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Clk3O35492 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Clk3O35492 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Clk3O35492 Ptprd-206ENSMUST00000107289 9899 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Clk3O35492 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Clk3O35492 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Clk3O35492 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC16.45■□□□□ 0.22
Clk3O35492 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC16.45■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 33.9 ms