Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Gm3757-201ENSMUST00000125878 675 ntBASIC4.75□□□□□ -1.65
Ccdc88bQ4QRL3 Gm13773-201ENSMUST00000156693 583 ntTSL 3 BASIC4.75□□□□□ -1.65
Ccdc88bQ4QRL3 1700027I24Rik-201ENSMUST00000183612 696 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
Ccdc88bQ4QRL3 Gm37533-201ENSMUST00000193848 545 ntBASIC4.75□□□□□ -1.65
Ccdc88bQ4QRL3 Gm37353-201ENSMUST00000194497 313 ntBASIC4.75□□□□□ -1.65
Ccdc88bQ4QRL3 CAAA01090905.1-201ENSMUST00000219056 426 ntTSL 2 BASIC4.75□□□□□ -1.65
Ccdc88bQ4QRL3 AC168274.2-201ENSMUST00000219252 338 ntTSL 5 BASIC4.75□□□□□ -1.65
Ccdc88bQ4QRL3 AC161453.1-201ENSMUST00000226078 884 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
Ccdc88bQ4QRL3 Gm4894-201ENSMUST00000067007 357 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
Ccdc88bQ4QRL3 Nlrp9c-202ENSMUST00000085944 3216 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
Ccdc88bQ4QRL3 Olfr887-202ENSMUST00000212502 6281 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
Ccdc88bQ4QRL3 Gm9218-201ENSMUST00000121068 2694 ntBASIC4.75□□□□□ -1.65
Ccdc88bQ4QRL3 Sacs-203ENSMUST00000119943 14991 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
Ccdc88bQ4QRL3 Ccr2-202ENSMUST00000165984 3515 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
Ccdc88bQ4QRL3 Olfr1193-202ENSMUST00000213893 3519 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
Ccdc88bQ4QRL3 Traj31-201ENSMUST00000103710 57 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
Ccdc88bQ4QRL3 Gm12787-201ENSMUST00000119234 396 ntBASIC4.75□□□□□ -1.65
Ccdc88bQ4QRL3 Gm23867-201ENSMUST00000122649 274 ntBASIC4.75□□□□□ -1.65
Ccdc88bQ4QRL3 Gm14135-201ENSMUST00000135438 591 ntTSL 3 BASIC4.75□□□□□ -1.65
Ccdc88bQ4QRL3 Tnfaip8-206ENSMUST00000145726 632 ntTSL 3 BASIC4.75□□□□□ -1.65
Ccdc88bQ4QRL3 Gm11665-201ENSMUST00000148136 285 ntTSL 5 BASIC4.75□□□□□ -1.65
Ccdc88bQ4QRL3 Gm17202-201ENSMUST00000171723 951 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
Ccdc88bQ4QRL3 Gm28574-201ENSMUST00000185757 699 ntBASIC4.75□□□□□ -1.65
Ccdc88bQ4QRL3 Gm28596-201ENSMUST00000185870 696 ntBASIC4.75□□□□□ -1.65
Ccdc88bQ4QRL3 Gm28397-201ENSMUST00000187970 699 ntBASIC4.75□□□□□ -1.65
Ccdc88bQ4QRL3 Gm29525-201ENSMUST00000189844 699 ntBASIC4.75□□□□□ -1.65
Ccdc88bQ4QRL3 Gm29523-201ENSMUST00000191415 699 ntBASIC4.75□□□□□ -1.65
Ccdc88bQ4QRL3 Gm32295-201ENSMUST00000192558 696 ntBASIC4.75□□□□□ -1.65
Ccdc88bQ4QRL3 Gm31260-201ENSMUST00000193478 696 ntBASIC4.75□□□□□ -1.65
Ccdc88bQ4QRL3 AC118006.1-201ENSMUST00000224211 501 ntBASIC4.75□□□□□ -1.65
Ccdc88bQ4QRL3 Olfr725-201ENSMUST00000089844 1110 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
Ccdc88bQ4QRL3 Atrx-202ENSMUST00000113573 10275 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
Ccdc88bQ4QRL3 Zfp442-202ENSMUST00000185796 1833 ntTSL 5 BASIC4.74□□□□□ -1.65
Ccdc88bQ4QRL3 Adgre4-201ENSMUST00000025004 3491 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
Ccdc88bQ4QRL3 AC153881.3-201ENSMUST00000218494 1561 ntBASIC4.74□□□□□ -1.65
Ccdc88bQ4QRL3 Olfr133-201ENSMUST00000113636 1090 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
Ccdc88bQ4QRL3 Mir466k-201ENSMUST00000116774 122 ntBASIC4.74□□□□□ -1.65
Ccdc88bQ4QRL3 Sult2a-ps1-201ENSMUST00000120317 341 ntBASIC4.74□□□□□ -1.65
Ccdc88bQ4QRL3 Gm6374-201ENSMUST00000159051 788 ntBASIC4.74□□□□□ -1.65
Ccdc88bQ4QRL3 Gm2343-201ENSMUST00000161177 1042 ntBASIC4.74□□□□□ -1.65
Ccdc88bQ4QRL3 Gm24369-201ENSMUST00000175387 96 ntBASIC4.74□□□□□ -1.65
Ccdc88bQ4QRL3 2900009J06Rik-201ENSMUST00000185310 498 ntTSL 2 BASIC4.74□□□□□ -1.65
Ccdc88bQ4QRL3 Gm18843-201ENSMUST00000194982 719 ntBASIC4.74□□□□□ -1.65
Ccdc88bQ4QRL3 Gm33091-201ENSMUST00000217798 748 ntTSL 3 BASIC4.74□□□□□ -1.65
Ccdc88bQ4QRL3 AC126673.3-201ENSMUST00000223414 3829 ntBASIC4.74□□□□□ -1.65
Ccdc88bQ4QRL3 Vmn1r89-201ENSMUST00000053008 951 ntAPPRIS P2 BASIC4.74□□□□□ -1.65
Ccdc88bQ4QRL3 Gm37626-201ENSMUST00000194332 4563 ntBASIC4.73□□□□□ -1.65
Ccdc88bQ4QRL3 Fam71d-201ENSMUST00000077968 1772 ntAPPRIS P2 TSL 1 (best) BASIC4.73□□□□□ -1.65
Ccdc88bQ4QRL3 Zfp946-204ENSMUST00000167740 1572 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
Ccdc88bQ4QRL3 Vmn1r43-205ENSMUST00000228709 12646 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
Ccdc88bQ4QRL3 Gm23951-201ENSMUST00000104029 132 ntBASIC4.73□□□□□ -1.65
Ccdc88bQ4QRL3 Clec5a-203ENSMUST00000129948 858 ntAPPRIS P4 TSL 1 (best) BASIC4.73□□□□□ -1.65
Ccdc88bQ4QRL3 Gm17159-201ENSMUST00000169043 482 ntBASIC4.73□□□□□ -1.65
Ccdc88bQ4QRL3 Snord93-201ENSMUST00000175580 71 ntBASIC4.73□□□□□ -1.65
Ccdc88bQ4QRL3 Gm27700-201ENSMUST00000185003 81 ntBASIC4.73□□□□□ -1.65
Ccdc88bQ4QRL3 Gm43574-201ENSMUST00000196226 809 ntTSL 3 BASIC4.73□□□□□ -1.65
Ccdc88bQ4QRL3 Gm42457-201ENSMUST00000197572 367 ntTSL 2 BASIC4.73□□□□□ -1.65
Ccdc88bQ4QRL3 Gm34314-201ENSMUST00000203622 367 ntBASIC4.73□□□□□ -1.65
Ccdc88bQ4QRL3 AC158641.1-201ENSMUST00000218933 229 ntBASIC4.73□□□□□ -1.65
Ccdc88bQ4QRL3 Gm45941-201ENSMUST00000221907 675 ntTSL 3 BASIC4.73□□□□□ -1.65
Ccdc88bQ4QRL3 n-R5s176-201ENSMUST00000082683 109 ntBASIC4.73□□□□□ -1.65
Ccdc88bQ4QRL3 Zfp616-201ENSMUST00000074813 5014 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
Ccdc88bQ4QRL3 AC151831.1-201ENSMUST00000227609 4033 ntBASIC4.72□□□□□ -1.65
Ccdc88bQ4QRL3 Vmn1r46-203ENSMUST00000226715 10861 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
Ccdc88bQ4QRL3 Vmn1r46-205ENSMUST00000228349 10861 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
Ccdc88bQ4QRL3 Olfr609-202ENSMUST00000216075 3429 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
Ccdc88bQ4QRL3 Gm38382-201ENSMUST00000193790 2499 ntBASIC4.72□□□□□ -1.65
Ccdc88bQ4QRL3 Cldn34b4-201ENSMUST00000101419 1103 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
Ccdc88bQ4QRL3 Mir3076-201ENSMUST00000175415 60 ntBASIC4.72□□□□□ -1.65
Ccdc88bQ4QRL3 Gm45013-201ENSMUST00000206883 178 ntBASIC4.72□□□□□ -1.65
Ccdc88bQ4QRL3 Gm45814-201ENSMUST00000212646 775 ntBASIC4.72□□□□□ -1.65
Ccdc88bQ4QRL3 Mmp12-201ENSMUST00000005950 3607 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
Ccdc88bQ4QRL3 Vmn1r81-205ENSMUST00000228764 13763 ntAPPRIS P2 BASIC4.71□□□□□ -1.65
Ccdc88bQ4QRL3 Tc2n-202ENSMUST00000160715 1386 ntTSL 5 BASIC4.71□□□□□ -1.65
Ccdc88bQ4QRL3 Gm44689-201ENSMUST00000208786 1372 ntTSL 5 BASIC4.71□□□□□ -1.65
Ccdc88bQ4QRL3 AC169038.1-201ENSMUST00000227378 1352 ntBASIC4.71□□□□□ -1.65
Ccdc88bQ4QRL3 AC115891.1-201ENSMUST00000215798 1755 ntBASIC4.71□□□□□ -1.66
Ccdc88bQ4QRL3 Gm25153-201ENSMUST00000157118 156 ntBASIC4.71□□□□□ -1.66
Ccdc88bQ4QRL3 Gm26844-201ENSMUST00000181690 673 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
Ccdc88bQ4QRL3 Gm29038-201ENSMUST00000191543 678 ntBASIC4.71□□□□□ -1.66
Ccdc88bQ4QRL3 Gm21847-202ENSMUST00000198681 883 ntTSL 5 BASIC4.71□□□□□ -1.66
Ccdc88bQ4QRL3 Irf2-209ENSMUST00000210218 535 ntTSL 3 BASIC4.71□□□□□ -1.66
Ccdc88bQ4QRL3 Zmym2-201ENSMUST00000022511 6974 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
Ccdc88bQ4QRL3 Hormad1-202ENSMUST00000090797 1511 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
Ccdc88bQ4QRL3 Gm16171-201ENSMUST00000118004 324 ntBASIC4.7□□□□□ -1.66
Ccdc88bQ4QRL3 Gm14768-201ENSMUST00000122126 678 ntBASIC4.7□□□□□ -1.66
Ccdc88bQ4QRL3 Gm24879-201ENSMUST00000158386 143 ntBASIC4.7□□□□□ -1.66
Ccdc88bQ4QRL3 Gm27379-201ENSMUST00000183730 123 ntBASIC4.7□□□□□ -1.66
Ccdc88bQ4QRL3 Gm28900-201ENSMUST00000185232 156 ntBASIC4.7□□□□□ -1.66
Ccdc88bQ4QRL3 Gm18491-201ENSMUST00000192492 1594 ntBASIC4.7□□□□□ -1.66
Ccdc88bQ4QRL3 Gm9762-201ENSMUST00000036976 444 ntBASIC4.7□□□□□ -1.66
Ccdc88bQ4QRL3 Olfr1436-201ENSMUST00000087812 948 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
Ccdc88bQ4QRL3 Zfp990-202ENSMUST00000105742 2996 ntAPPRIS P1 TSL 2 BASIC4.7□□□□□ -1.66
Ccdc88bQ4QRL3 C130023A14Rik-201ENSMUST00000193537 3087 ntBASIC4.7□□□□□ -1.66
Ccdc88bQ4QRL3 Fat3-201ENSMUST00000082170 18456 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
Ccdc88bQ4QRL3 Nufip2-201ENSMUST00000100802 5158 ntAPPRIS P2 TSL 1 (best) BASIC4.69□□□□□ -1.66
Ccdc88bQ4QRL3 Olfr393-201ENSMUST00000102523 939 ntAPPRIS P1 BASIC4.69□□□□□ -1.66
Ccdc88bQ4QRL3 Gm25500-201ENSMUST00000104426 123 ntBASIC4.69□□□□□ -1.66
Ccdc88bQ4QRL3 Gm25529-201ENSMUST00000104850 92 ntBASIC4.69□□□□□ -1.66
Ccdc88bQ4QRL3 Gm23048-201ENSMUST00000157237 129 ntBASIC4.69□□□□□ -1.66
Retrieved 100 of 76,532 protein–RNA pairs in 78.5 ms