Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Vmn2r21-201ENSMUST00000163607 2562 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Vmn2r20-201ENSMUST00000172199 2562 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Gm38101-201ENSMUST00000193484 3557 ntBASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Olfr1152-202ENSMUST00000213308 6201 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Gm26753-201ENSMUST00000181938 2731 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Abca12-201ENSMUST00000087268 9137 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Gm43882-201ENSMUST00000204871 2264 ntBASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Gm7709-201ENSMUST00000199391 1858 ntBASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Rgs21-202ENSMUST00000184189 1674 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Gm18180-201ENSMUST00000187562 1484 ntBASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Zfp931-202ENSMUST00000108924 962 ntAPPRIS P1 TSL 3 BASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Gm14322-201ENSMUST00000108942 1074 ntTSL 2 BASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Gm14399-205ENSMUST00000109062 626 ntTSL 5 BASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Gm12571-201ENSMUST00000118132 243 ntBASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Gm11869-201ENSMUST00000118701 329 ntBASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Gm14322-202ENSMUST00000119838 1077 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Gm14418-202ENSMUST00000128657 1077 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Zfp931-204ENSMUST00000131702 704 ntTSL 3 BASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Gm22840-201ENSMUST00000158444 136 ntBASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Gm17521-201ENSMUST00000165345 468 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Vmn1r-ps149-201ENSMUST00000176997 183 ntBASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Trav14n-1-201ENSMUST00000177578 340 ntAPPRIS ALT2 BASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 9330182O14Rik-201ENSMUST00000179120 423 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Gm27036-201ENSMUST00000182465 980 ntBASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Trav14d-1-202ENSMUST00000187138 340 ntAPPRIS ALT2 BASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Gm28830-201ENSMUST00000188192 213 ntBASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Gm37030-201ENSMUST00000194254 295 ntBASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Gm36954-201ENSMUST00000195362 363 ntBASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Rpl36a-ps2-201ENSMUST00000197973 321 ntBASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Ighv1-68-201ENSMUST00000198789 294 ntBASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Gm44133-201ENSMUST00000203823 701 ntTSL 2 BASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Gm8231-201ENSMUST00000221617 783 ntBASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 AC154329.2-201ENSMUST00000225257 383 ntBASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 AC170810.3-201ENSMUST00000226177 374 ntBASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 AC113031.3-201ENSMUST00000226552 190 ntBASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 AC166344.2-201ENSMUST00000226747 374 ntBASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Olfr198-201ENSMUST00000064452 1054 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Olfr504-201ENSMUST00000075595 958 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 n-R5s79-201ENSMUST00000083071 120 ntBASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Gm25481-201ENSMUST00000083221 158 ntBASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Gm25821-201ENSMUST00000093657 133 ntBASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Gm37814-201ENSMUST00000195820 3644 ntBASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Vmn2r7-202ENSMUST00000161972 3583 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 C87499-203ENSMUST00000107143 1431 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Olfr609-203ENSMUST00000216360 3295 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Gm45321-201ENSMUST00000209286 2863 ntTSL 5 BASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Gm2123-201ENSMUST00000221476 2836 ntBASIC5.29□□□□□ -1.56
Ddb1Q3U1J4 Gm45137-201ENSMUST00000208652 4415 ntBASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 AC151831.1-201ENSMUST00000227609 4033 ntBASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 Vmn1r21-202ENSMUST00000203488 1673 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 Elavl4-205ENSMUST00000106600 3799 ntTSL 5 BASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 Gm614-201ENSMUST00000101358 748 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 Gm25272-201ENSMUST00000104293 128 ntBASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 Ttc29-203ENSMUST00000117845 650 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 Vmn1r-ps2-201ENSMUST00000118464 834 ntBASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 Gm15553-201ENSMUST00000118757 430 ntBASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 Olfr383-ps1-201ENSMUST00000118895 935 ntBASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 Smt3h2-ps4-201ENSMUST00000121569 288 ntBASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 Gm11403-201ENSMUST00000122195 369 ntBASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 Vmn1r-ps3-201ENSMUST00000122439 917 ntBASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 Gm22480-201ENSMUST00000122568 128 ntBASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 Mup-ps2-201ENSMUST00000142602 533 ntBASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 Gm16577-201ENSMUST00000161579 471 ntTSL 3 BASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 Gm17030-201ENSMUST00000167016 393 ntBASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 Vmn1r-ps32-201ENSMUST00000174389 956 ntBASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 Anks1b-207ENSMUST00000182045 544 ntTSL 3 BASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 1700063H06Rik-201ENSMUST00000183678 445 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 Gm27861-201ENSMUST00000183920 214 ntBASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 Gm29556-201ENSMUST00000187591 696 ntBASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 Gm37300-201ENSMUST00000193327 280 ntBASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 Gm37659-201ENSMUST00000194574 111 ntBASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 Igkv14-118-2-201ENSMUST00000198287 339 ntBASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 Igkv14-126-1-201ENSMUST00000199899 346 ntBASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 Gm45200-201ENSMUST00000207434 919 ntBASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 Spcs2-205ENSMUST00000207580 868 ntTSL 5 BASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 Gm8745-201ENSMUST00000207846 782 ntBASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 Gm45530-201ENSMUST00000211658 225 ntBASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 Olfr27-202ENSMUST00000216405 1125 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 CT025536.1-201ENSMUST00000226744 844 ntBASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 Olfr731-201ENSMUST00000059565 981 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 Gm20667-201ENSMUST00000175674 1930 ntBASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 Slfn8-203ENSMUST00000108152 3083 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 Obscn-202ENSMUST00000047441 24175 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 Gm3972-201ENSMUST00000173960 2861 ntBASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 Ndst4-205ENSMUST00000174648 4996 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 0610010F05Rik-202ENSMUST00000093267 3646 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
Ddb1Q3U1J4 AC153563.1-202ENSMUST00000217695 1838 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
Ddb1Q3U1J4 Nae1-201ENSMUST00000034349 1808 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
Ddb1Q3U1J4 Trim12c-201ENSMUST00000059037 3740 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
Ddb1Q3U1J4 Olfr1484-203ENSMUST00000215567 3699 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
Ddb1Q3U1J4 Slc9c1-201ENSMUST00000159945 3836 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
Ddb1Q3U1J4 Olfr1167-202ENSMUST00000216951 4276 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
Ddb1Q3U1J4 H2al1n-201ENSMUST00000105137 514 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
Ddb1Q3U1J4 Rab9b-ps1-201ENSMUST00000119785 606 ntBASIC5.27□□□□□ -1.57
Ddb1Q3U1J4 Gm14982-201ENSMUST00000121102 442 ntBASIC5.27□□□□□ -1.57
Ddb1Q3U1J4 Gm25106-201ENSMUST00000122672 134 ntBASIC5.27□□□□□ -1.57
Ddb1Q3U1J4 Gm12823-201ENSMUST00000134494 318 ntTSL 5 BASIC5.27□□□□□ -1.57
Ddb1Q3U1J4 Gm24289-201ENSMUST00000157629 135 ntBASIC5.27□□□□□ -1.57
Ddb1Q3U1J4 5430401F13Rik-202ENSMUST00000161385 608 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
Ddb1Q3U1J4 Defa27-202ENSMUST00000168340 371 ntTSL 5 BASIC5.27□□□□□ -1.57
Retrieved 100 of 76,532 protein–RNA pairs in 82.1 ms